Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_P01
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.22 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 581  PLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 474
            PLT  R  + T    PCR+   SP++     T RST
Sbjct: 915  PLTSPRQPAETHAGSPCRNSA-SPASSDRSGTPRST 949


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 623 EKPVPYPVQGXQW 585
           E  VPY V G QW
Sbjct: 388 EMKVPYAVNGDQW 400


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 421 WYRYLNWVRYG 453
           W  +L+W RYG
Sbjct: 587 WLSFLSWFRYG 597


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 421 WYRYLNWVRYG 453
           W  +L+W RYG
Sbjct: 587 WLSFLSWFRYG 597


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,445
Number of Sequences: 336
Number of extensions: 2707
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)