Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_O24
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390... 33 0.29
08_02_0223 - 14452059-14452359,14452439-14452609,14452692-144532... 31 1.6
03_03_0127 - 14669451-14670058,14671349-14672240 31 1.6
10_08_0307 - 16654691-16654890,16656230-16656698 30 2.7
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 29 4.8
10_02_0056 - 4656268-4656804 29 6.3
09_06_0258 + 21900685-21901927,21902571-21902710 29 6.3
09_06_0247 + 21844311-21845646,21845991-21846118 29 6.3
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 29 6.3
01_06_0509 - 29921224-29924589 29 6.3
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 28 8.3
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 28 8.3
>07_03_1536 -
27537394-27537576,27537837-27538073,27538164-27539078,
27540028-27540282,27540872-27540940,27542743-27542805,
27542833-27542901,27542962-27542997
Length = 608
Score = 33.1 bits (72), Expect = 0.29
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -1
Query: 582 LMVYVTAVEALFTLCSVTGLLWMRYTR--PRLQRPIRVSLVLPAIFLITCTFIVICSCFK 409
L ++ VE L V W + R PR V ++L + F IT + CF
Sbjct: 222 LREWLPPVEGAVALSIVLAFAWQKAVRAWPRAM----VGVILWSSFGITLAVGAMLMCFS 277
Query: 408 YPKHVGIGVAFI--ALGVPIYMIFI 340
P VG+GVA + ++G +Y ++
Sbjct: 278 MPATVGLGVAMVMFSIGTGLYACWV 302
>08_02_0223 -
14452059-14452359,14452439-14452609,14452692-14453299,
14453393-14453524,14453606-14454067,14454146-14454979
Length = 835
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 640 THIYVPGHPAATAVERHRSSDGVRDCCRSVVHP 542
T GHPA TAV++H S G RS +P
Sbjct: 24 TEAVAEGHPATTAVQQHTSMSGGTSASRSSRNP 56
>03_03_0127 - 14669451-14670058,14671349-14672240
Length = 499
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Frame = -1
Query: 699 GHLPLAISLIDIXRXTPGPSLIFMCLVTLLLLLSNGIEALMVYVTAVEALFTLCSVTGLL 520
G LP A +L TP ++ +TL + ++ + ++ + +L L +
Sbjct: 339 GLLPRAFALRAPVFDTPWVGILATAAITLAMSFTS-FDTIVASANFLYSLGMLLEFAAFV 397
Query: 519 WMRYTRPRLQRPIRVSLV-LPA---IFLITCTFIVICSCFKYPKHVGIGVAFIALGVPIY 352
+R P + RP V L LPA + + F+V K I F A GV +Y
Sbjct: 398 RLRARLPAMPRPYAVPLRGLPAAAALCAVPSAFLVFVMAIAGWKVYAISAVFTAAGVAVY 457
Query: 351 MI 346
+
Sbjct: 458 YL 459
>10_08_0307 - 16654691-16654890,16656230-16656698
Length = 222
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +1
Query: 379 GDPDAD-VLRVFKA-----RAYDNKCAGYQEDSGQDETDADRSLEAWSRVAH 516
G PDAD ++R + A A + G EDS D +D D S W+R AH
Sbjct: 35 GHPDADRLVRAWLAVSRRRHALVRRLVGLLEDSYGDGSDGDGSSWPWNRAAH 86
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 329 FCHLMNIMYMGTPSAMKATPMPTCFGYLK 415
F H NI Y PS+ ATPMPT +LK
Sbjct: 141 FIHYRNIQY-NFPSSNFATPMPTSVEHLK 168
>10_02_0056 - 4656268-4656804
Length = 178
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 463 QDETDADRSLEAWSRVAHPQQAGHRAEGEQRFDSSHVHH 579
+D +A + SR+A +R GE FDSS +HH
Sbjct: 74 KDSENASFASRRRSRIASAIIVDYRCLGEPLFDSSRIHH 112
>09_06_0258 + 21900685-21901927,21902571-21902710
Length = 460
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 653 PPGLHSYLCAWSP 615
PP L SY+CAWSP
Sbjct: 71 PPPLVSYICAWSP 83
>09_06_0247 + 21844311-21845646,21845991-21846118
Length = 487
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 653 PPGLHSYLCAWSP 615
PP L SY+CAWSP
Sbjct: 71 PPPLVSYICAWSP 83
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 653 PPGLHSYLCAWSP 615
PP L SY+CAWSP
Sbjct: 426 PPPLVSYICAWSP 438
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 653 PPGLHSYLCAWSP 615
PP L SY+CAWSP
Sbjct: 67 PPPLVSYVCAWSP 79
>01_06_0509 - 29921224-29924589
Length = 1121
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 233 DHNSLQSSGKHKNSLEHAKLKLLHAVNIQLGLFCHLMNIMYMGT 364
DH+S +SS H++ A + A+ + LFC ++ I+ +G+
Sbjct: 697 DHSSPRSSNDHQSHRRQASMASSIAMGLLFSLFCIIVIIIAIGS 740
>10_08_0824 + 20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -3
Query: 541 LLGDRLAVDALHATTPPATDPRQSRPARYLPDNLHIYCHMLVL*IPEARRHRGRLHSAGR 362
++ R+ VD LH+ TDP + H YC +L + + H G+ +
Sbjct: 852 IMFSRMFVDYLHSLNVNGTDPASCLLGASQLEKRHCYCRILEVLVNVWAYHSGKKMAYLN 911
Query: 361 PHIHDIHQ 338
P DI +
Sbjct: 912 PVTGDIRE 919
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 460 GQDETDADRSLEAWSRVAHPQQAGHRAEGE 549
G+DE A ++LE A QQAG AE E
Sbjct: 559 GEDEPQAPQTLEGSDLAAASQQAGAEAEAE 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,316,753
Number of Sequences: 37544
Number of extensions: 421150
Number of successful extensions: 1179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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