Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O23
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine rece...    29   4.3  
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein33 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 60  LSCCIHYLTDKAHELANNKYVGFFTKIITYPLMIEISTLFTI 185
           L C   YL     E+ +N+YV FF  ++++ ++  I  L TI
Sbjct: 229 LMCYTSYLM--VPEMMSNRYVAFFMSLVSWAMIAMIDGLLTI 268


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 202 FFEST--EIVNKVDISIINGYVIIFVKKPTYLL 110
           F+E T  EI++KV ++  NG +++  +   YLL
Sbjct: 483 FWEPTNGEIISKVSVNAANGQIVLAARDTVYLL 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,656
Number of Sequences: 27780
Number of extensions: 223487
Number of successful extensions: 910
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)