Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O21
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   268   8e-73
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   135   6e-33
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   117   2e-27
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...   108   1e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    95   1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    78   1e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    72   8e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    69   6e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    44   2e-05
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    28   1.8  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.5  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   7.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  268 bits (656), Expect = 8e-73
 Identities = 125/154 (81%), Positives = 136/154 (88%), Gaps = 1/154 (0%)
 Frame = -2

Query: 753 DFEQEMATXDPAAP-SRVLRLPDGQVITIGNERFRCPEALFQPSSLGMEACGIHETTYNS 577
           DFEQE+ T   ++   +   LPDGQVITIGNERFR PEALFQPS+LG+E  GIHE TYNS
Sbjct: 222 DFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNS 281

Query: 576 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 397
           IMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWI
Sbjct: 282 IMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWI 341

Query: 396 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 295
           GGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 342 GGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  135 bits (327), Expect = 6e-33
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
 Frame = -2

Query: 753 DFEQEMATXDPAAPS-RVLRLPDGQVITIGNERFRCPEALFQPSSLGMEACGIHETTYNS 577
           DF  E+ +     P     +LPD Q IT+G E F  PE LF P  +G EA G+H   + S
Sbjct: 227 DFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKS 286

Query: 576 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 397
           I+  D+D+R  LY+N VLSGG+T+  G  +R   E+ A++    ++KI A PER ++ W+
Sbjct: 287 ILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWL 346

Query: 396 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 295
           GGSILASLSTF+++ I+ +EY ++  +++ R+ F
Sbjct: 347 GGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  117 bits (282), Expect = 2e-27
 Identities = 61/137 (44%), Positives = 89/137 (64%), Gaps = 12/137 (8%)
 Frame = -2

Query: 696 LPDGQVITIGNERFRCPEALFQPSSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 517
           LPDG+VI +G+ER+ CPE LFQP  +G E  G+ E  +++I   DVDIRK LY   VLSG
Sbjct: 242 LPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSG 301

Query: 516 GTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-L 373
           G++MY G+  R++KEI  L         P+ +   K+KI   P R+++V+IGG++LA  +
Sbjct: 302 GSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIM 361

Query: 372 STFQQMWISKQEYDESG 322
           +    MW+SK E++E G
Sbjct: 362 AQNDHMWVSKAEWEEYG 378


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score =  108 bits (259), Expect = 1e-24
 Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 11/135 (8%)
 Frame = -2

Query: 693 PDGQVITIGNERFRCPEALFQPS---SLGME------ACGIHETTYNSIMKCDVDIRKDL 541
           PDG     G ERFR  E LF PS   S   E      + G+HE  Y SI+ CD ++R  L
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343

Query: 540 YANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLST 367
             N V++GGT++ PG+++R+Q E+  LA  S + +           +VW GGSILASL  
Sbjct: 344 LNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDN 403

Query: 366 FQQMWISKQEYDESG 322
           FQ +W+SKQEYDE G
Sbjct: 404 FQHLWVSKQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
 Frame = -2

Query: 603 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 424
           GI +   N I +CDVDIR  L  N ++ GGT++  G + R+Q E++ L P + ++KI A 
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384

Query: 423 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 298
               ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 42/128 (32%), Positives = 64/128 (50%)
 Frame = -2

Query: 684 QVITIGNERFRCPEALFQPSSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 505
           QV+ + NERF  PE LF PS + +   GI E    S+     +I+  L  N V  GG   
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331

Query: 504 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 325
           +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +    I++ EY E 
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390

Query: 324 GPSIVHRK 301
           G +I+ RK
Sbjct: 391 GANIMTRK 398


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
 Frame = -2

Query: 678 ITIGNERFRCPEALFQPSSLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 502
           I +G ERF  PE  F P     +    + E   N +    +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339

Query: 501 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 364
               +R+Q+++  +                  + + +I+   ++ +VW GGS+LA    F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399

Query: 363 QQMWISKQEYDESGPSIVHR 304
                +K +Y+E G SI  R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 31/118 (26%), Positives = 62/118 (52%)
 Frame = -2

Query: 663 ERFRCPEALFQPSSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 484
           E+ R PE +F PS +G++  GI E   + + +  ++ ++ L +N +++GG    PG+  R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653

Query: 483 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 310
           +++E+T++ P    I +          W G S  +    F+   ++++EY E GP  +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = -2

Query: 549 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 379
           K+LY++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I  
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586

Query: 378 SLSTFQQMWISKQEYDESGPSIVHRK 301
            +    ++WI   ++   G  ++  K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -2

Query: 753 DFEQEMATXDPAAPSRVLRLPDGQVITIGNERFRCPEALFQPSSLGMEACG--IHETTYN 580
           D E+E A     A S     P   V  +  + +  PE + QP+SL +E  G  I      
Sbjct: 205 DVEEEKAEEKSDAESMAPSTPPKTVNELPEQIYEKPEIVLQPNSL-IEPLGKIIQVLKRE 263

Query: 579 SIMKCDVDIRKDLY-ANTVL 523
            ++K D+D  K ++   TVL
Sbjct: 264 VVVKSDIDDEKIVFDEKTVL 283


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -2

Query: 402 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 301
           ++GGSI+A  S  + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 749  SSRRWPPXIQQLPREXYDFPTVRSSPSETKDSVAQRLXSNPRPWV 615
            S   W   I  +    +++  VRSS S+TKD+         RPW+
Sbjct: 1501 SMNGWLEEIGTMSSSSFEYQLVRSSLSDTKDTFRSCFL---RPWI 1542


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 477 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 367
           KEI++ A S + +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
 Frame = -2

Query: 681 VITIGNERFRCPEALFQPSSLG-MEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 505
           ++T+ NE  +  E L   S    +      E+ +     CD+D    ++ +   +  T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192

Query: 504 YPGIADRMQKEITALAPSTMKIKIIAPPERKYS 406
           +P  AD     I        ++K  A   RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,923
Number of Sequences: 5004
Number of extensions: 59689
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)