Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_O18
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.82
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.82
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.4
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.4
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.3
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 27 4.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 7.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.6
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 26 7.6
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.82
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -2
Query: 476 PQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 300
P +KK TLDD D P+ S D S + ++E + N+ +S P S
Sbjct: 94 PSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTNKNESLPGTS 152
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.82
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = -2
Query: 554 IQLHSQPASASNFRLT---QTNGNRI-SIPPQQKKPTLDDDDFPS-LSMGRDDHPNIGAS 390
+++ ASN RL + NG I S+ + +K ++DD S LS+ ++ N+
Sbjct: 1002 VEVERNALLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLI 1061
Query: 389 SVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSTE 285
S Q K + +++ ++ N + +K QR+ E
Sbjct: 1062 SSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVE 1096
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -2
Query: 485 SIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQT---QS 315
SI + L+ S++ + P+ A + P ++ E A+ N T +
Sbjct: 552 SISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNYATPLSKP 611
Query: 314 QPK--KSQRSTEAFPALSATAHSPAAPP 237
QPK K + F A S A PA+PP
Sbjct: 612 QPKDTKGSKLGNTFVAPSPAASLPASPP 639
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = -2
Query: 515 RLTQTNGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQAL 336
R +TN +R + PPQ + +D+D S DD P I + ++ + M+ +
Sbjct: 110 RRRKTNNDRRNYPPQNRTAKPNDNDGDDYSFFEDDLPVIKDTFMR--GFQSFKQRSMEWV 167
Query: 335 KNNQTQSQPKKSQRSTEAFPALSATAHSP 249
+N ++ ++ E + A S SP
Sbjct: 168 ENIASKFDGEEEDDDDEKYSAPSKIYPSP 196
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.5 bits (58), Expect = 2.5
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Frame = -2
Query: 575 NSKPSVSIQLHSQPASASNFRLTQTNGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIG 396
N+ PS+S QLH + + + N N S P P + + D +G
Sbjct: 323 NAFPSLSDQLHLKSLQSMKRVTSIFNDNDDSFPSASSSPQRQAYMTDKMPLREID---VG 379
Query: 395 ASSVQPPKVTMINSQEMQALKNNQTQSQPKKS-QRSTEAFPALSATAHSPAAPPQWITVS 219
SS K +NS LK + +++ S Q S + + +PA P+ I +
Sbjct: 380 -SSQSSSKTARLNSSPKSTLKTSSVKTRRSHSAQSSRKVSDYPNMVVITPADLPEGIDTT 438
Query: 218 KG 213
+G
Sbjct: 439 QG 440
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/56 (21%), Positives = 30/56 (53%)
Frame = -2
Query: 539 QPASASNFRLTQTNGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPK 372
+P++ ++ + + N + + +++ P DDDDF + G P +++ +PP+
Sbjct: 1376 KPSTITSTKASAKNKGKKASSVKKQSPEDDDDDF--IIPGSSSTPKASSTNAEPPE 1429
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 332 NNQTQSQPKKSQRSTEAFPALSATAHS 252
+NQT P +STE P S T HS
Sbjct: 269 SNQTFMAPASGLQSTEEIPQFSKTGHS 295
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/77 (24%), Positives = 32/77 (41%)
Frame = -2
Query: 482 IPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKK 303
+P Q K + + PSL + P G+ + NS + ++N+QTQS +
Sbjct: 367 VPSQFYKQKVVQNSPPSLLSTDNKIPESGSDHPS----SQDNSSKASLVENSQTQSSTPR 422
Query: 302 SQRSTEAFPALSATAHS 252
T P ++ HS
Sbjct: 423 KPLPTTTSPKVNPEPHS 439
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 302 SQRSTEAFPALSATAHSPAAPPQWITVS 219
S R E P+LSA A P PP TVS
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVS 265
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 359 NSQEMQALKNNQTQ--SQPKKSQRSTEAFPALSATAHSPAAPPQWIT 225
+ QE+ ++ N+ Q S P S E +L+A AH+P W T
Sbjct: 304 DEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAVAHNPPGSIGWQT 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,708
Number of Sequences: 5004
Number of extensions: 41119
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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