Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O17
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.68 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.68 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 445 PADRPSRSAYSTIGRSSPG-DPCEPQSKPYNVVQETRKRKGLKEGLP 308
           P + PS   Y+ +  S  G +  +  S+PY   +     KG KEG+P
Sbjct: 567 PDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKKEGMP 613


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 445 PADRPSRSAYSTIGRSSPG-DPCEPQSKPYNVVQETRKRKGLKEGLP 308
           P + PS   Y+ +  S  G +  +  S+PY   +     KG KEG+P
Sbjct: 567 PDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKKEGMP 613


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 68  LYCNYYFKLYF 36
           LYCN Y KLY+
Sbjct: 99  LYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 68  LYCNYYFKLYF 36
           LYCN Y KLY+
Sbjct: 99  LYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 68  LYCNYYFKLYF 36
           LYCN Y KLY+
Sbjct: 99  LYCNNYRKLYY 109


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 54  IITVQVDHVHLHNNVIPKKRYSLVYNLFS 140
           ++ + V +   H+  +P K+Y  V  LFS
Sbjct: 387 VLPISVANELRHSRPVPAKKYDCVTLLFS 415


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 54  IITVQVDHVHLHNNVIPKKRYSLVYNLFS 140
           ++ + V +   H+  +P K+Y  V  LFS
Sbjct: 387 VLPISVANELRHSRPVPAKKYDCVTLLFS 415


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 734  HSILMPSIEVVAKSFQQXEDACTHVC*LLSPV 639
            HS+L  +  VVA S     +  T++  +L PV
Sbjct: 939  HSVLHSAQSVVASSASNVTNVTTNLTTILPPV 970


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,951
Number of Sequences: 438
Number of extensions: 4979
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)