Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O15
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.34 
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    29   0.59 
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    29   0.78 
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.2  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.2  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   4.2  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   5.5  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    26   7.3  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   7.3  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 805 PNTIEIGAMDKPHQDSSILLVDPVXQEL 722
           PNTI +GA   P  D+++ +VDP  Q L
Sbjct: 582 PNTIRVGAFWYPFVDATLAIVDPETQVL 609


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 403 NIDRKVQMNSS*LCVRRQSSTLYISL----LSFSSFRAC*HDCTSPTMQLISALSSE 561
           ++ R +++ +S  C+    +   + L     SFSS R   H   +P  +LI+ALSSE
Sbjct: 12  SVSRSIRIPASNGCINLGRNAYRVQLAKAPFSFSSIRRSSHTAGNPRSKLINALSSE 68


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -1

Query: 662 STTALVRSNESPVLLCSEIAPEQPYKLRKLLLSHSELNALMSCIVGEVQSCQQAL 498
           ++T L+R NE    L +E+  +  ++   +LLS S+L  L + +    + CQ+A+
Sbjct: 499 NSTILLR-NEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRGCQKAV 552


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 256 PNCTTNLVPSRQYRFCKQYEVAMFKVT 176
           PN   N VP   YR  K++E A   VT
Sbjct: 74  PNTDINQVPREPYRLLKEFEWATIDVT 100


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 152 YPGRYYNYCNFKHSNFILFAKSILA 226
           Y G+ YNY  F+  NFI  +  I+A
Sbjct: 338 YTGKLYNYDAFQSGNFIALSALIVA 362


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 229 KGQDWWYNWESYA 267
           KG +W+YNW SY+
Sbjct: 316 KGINWYYNWGSYS 328


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 152 YPGRYYNYCNFKHSNFILFAKSILAGRDKIGGTIGKVMR 268
           + GR+Y  C    +NFI+       GR +IG  I ++ +
Sbjct: 351 FEGRFYRLCVHPIANFIMQRYIRRLGRKEIGSVIDELKK 389


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 767 SG*QYFISGSCXXGAVVKFVTANKDSQIIGDIYPTSTTALVRSNESPVLLCSEI--APEQ 594
           +G Q FISG C     +K + A+ ++++    +  +T      +     L   +  APE 
Sbjct: 277 NGNQLFISGDCYRPQSIKLIRASGETEVFDFSFDDATGFFYEQDAVAECLLKNMKEAPEI 336

Query: 593 PYK 585
           P++
Sbjct: 337 PHE 339


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 134  LL*SQAYPGRYYNYCNFKHSNFILFAKS 217
            LL ++ +  +YY +  F+H N + + KS
Sbjct: 1294 LLNTELHLTKYYGFSFFRHGNIVAYGKS 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,013
Number of Sequences: 5004
Number of extensions: 50273
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)