Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O08
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    29   1.0  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    28   1.4  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   5.5  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 430 WSESADSDLIESQI*KKNVITDCRKSCGSHVPXKGRDKRYTAQ 302
           W E AD D+I  ++ ++++   C K CG  +P   R+  Y A+
Sbjct: 140 WKELADDDVIWHRMCEQHINRKCEK-CGWGLPLLERNTLYAAK 181


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 425 RPPVQSVGSTRVPRAPSPLGHDGYYKF 505
           RPP     STR  RAP  L  D YY F
Sbjct: 194 RPPYTEYVSTRWYRAPELLLRDSYYSF 220


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 566 IIQELSHKFAPFCNGSTFID*ICN 495
           +++++  KF P C G+T I   C+
Sbjct: 262 VVKDMEKKFCPSCGGNTLIKTTCS 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,071
Number of Sequences: 5004
Number of extensions: 58934
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)