Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O06
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    32   0.12 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.48 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   5.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   7.8  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 22/59 (37%), Positives = 25/59 (42%)
 Frame = -2

Query: 649 HVDRPVPVHVEKPVPYPVKYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 473
           H D   P   E P  +P     PP   SRS S +  +   RSQL   S     STS ST
Sbjct: 295 HSDNNSPSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLS-AENDSTSNST 352


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 739 PPCIFPNQAXPRREARPIPGRKPVPYPVKVHVDRPVPVHVEKPVPYPVKYQCPPLTP 569
           P  + P+ +    E + +  + P P P  V V  P P  +  P P P+    PP  P
Sbjct: 710 PSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 691 PIPGRKPVPYPVKVHVDRPVPVHVEKPVPYPVKYQCPPLTPSRSTSRTQ*KRPCRSQLT 515
           PIP  +P P PV V   +     + + +P  V  + PP  P R  S  +   P  +  T
Sbjct: 271 PIPSPRP-PQPVAVEAIQQSRAVISQQLPLHVSPRKPPKPPLRKVSTQRSSSPIENLAT 328


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 631  PVHVEKPVPYPVKYQCPPLTPSRSTSRTQ*KRPC-RSQLTSP 509
            PV V  P+P PV    PP  P++         P  R + T+P
Sbjct: 889  PVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRPKSTTP 930



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 617  EASSVPRQVPVPAPYPVEKHIP--YPVEKAVPFPVNIPVDRP 498
            EA + P  VP P P PV +  P   P ++ V    + P  RP
Sbjct: 884  EALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRP 925


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
 Frame = -2

Query: 739  PPCIFPNQAXPRREARPIPGRK---PVPYPVKVHVDRPVPVHVEKPVPYPVKYQCPPLTP 569
            PP   P    P     P+P      PVP P       PVP     PVP P         P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSE-----AP 1247

Query: 568  SRSTSRTQ*KRPCRSQLTSPSTGHTQSTS 482
            S ST R+    P  +   SP++    S +
Sbjct: 1248 SVSTPRSSVPSPHSNASPSPTSSSMASAA 1276



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
 Frame = -2

Query: 739  PPCIFPNQAXPRRE----ARPIP---GRKPVPYPVKVHVDRPVPVHVEKPVPYPVKYQCP 581
            PP   P+ A P  +    A P+P   G  PVP P       P P     PVP P     P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA-GVP 1189

Query: 580  PLTP 569
            P+ P
Sbjct: 1190 PVPP 1193


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 611 SSVPRQVPVPAPYPVEKHIPYPVEKAVPFPVNIPVD---RPYPVHIEKHVP 468
           S +P +VP P P       P  +   +P  +N+ ++   +P   H E+H+P
Sbjct: 586 SVIPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVSLESSKKPEIFH-ERHIP 635


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 611 SSVPRQVPVPAPYPVEKHIP-YPVEKAVPFPVNIPV 507
           +S+   +P   P+P    +P YP +  +P   NIPV
Sbjct: 277 TSMEYYLPNAYPHPTGISLPFYPFDSGIPVSPNIPV 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,969
Number of Sequences: 5004
Number of extensions: 50992
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)