Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O04
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0369 + 2651192-2651862,2652103-2652158,2652816-2652874,265...    31   1.6  
05_07_0359 - 29539294-29540832,29542366-29542518                       30   2.1  
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238     30   2.8  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     29   3.8  
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    28   8.7  

>06_01_0369 +
           2651192-2651862,2652103-2652158,2652816-2652874,
           2653094-2653165,2653356-2653439,2654522-2654629,
           2655543-2655605,2655733-2655813,2656316-2656421,
           2657111-2657244,2657753-2657830,2658462-2658500,
           2658673-2658755,2659228-2659300,2659842-2660012
          Length = 625

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 340 SALCGRCRSAWSWWWGTRARC 278
           S +CG C   +S WWGT   C
Sbjct: 147 SYVCGNCGEGFSQWWGTCRHC 167


>05_07_0359 - 29539294-29540832,29542366-29542518
          Length = 563

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 433 LSATRATPQQRRNSAGTPXRRAXXRGSVKYRIVSAAKPDGXSPPQDSPL 579
           L A R   + R+N+  TP      RG  + R  +AA     +PP  SPL
Sbjct: 229 LGAKRGPGRPRKNATATPLSLGVKRGPGRPRKNAAAAASPVAPPPASPL 277


>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
          Length = 472

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 271 GHGTSRASPTTNSMRSDTSHTERRGT-FATFNVSRP 375
           GH   R  P  +SM S +  T ++GT FA+F   RP
Sbjct: 181 GHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRP 216


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 303 QLHAERHLPHRAEGHVRHLQRESSVVGERVRQPRPR 410
           Q H  RH  H+ + H  H QR+    G R R PR R
Sbjct: 135 QRHHHRHHHHQRQRHHHHHQRQQR-RGSRTRDPRVR 169


>06_03_1306 +
           29208882-29209547,29209641-29209854,29209947-29210023,
           29210132-29210171,29210254-29210323,29210419-29210488,
           29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 HHQLHAERHLPHRAEGHVRHLQR 365
           H QL  +R L  R E H R+LQR
Sbjct: 375 HEQLEVQRQLQLRIEEHARYLQR 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,484,161
Number of Sequences: 37544
Number of extensions: 312810
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)