Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O03
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    27   2.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   4.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   9.7  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   9.7  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   9.7  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 733 HPQVVMTGAHIAXKYAPGNLRGESPENGT 647
           HPQV++ G  IA K A   LR  S +N +
Sbjct: 118 HPQVIIDGYRIATKTAIDALRASSIDNSS 146


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -1

Query: 275  TGGQGHLPG--RRWSPPGLSHR*QPLQ--VGRAGRLGHRVRAEGRARGLRQRGP 126
            TGG GH+PG   + + P   H     +  + +A      +RA  R   LRQR P
Sbjct: 1574 TGGLGHMPGWWFQMASPNTGHLLTQFENAITKALHSNGELRARLRVEALRQRFP 1627


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 29  ICGRFYFGNVLNSVSGGSVTPRVHLPVDPRPHA 127
           I GRF  GN  N ++     PR+ +  DPR  A
Sbjct: 102 IAGRFTPGNFTNYITRTYREPRLIIVTDPRADA 134


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 686 PGQFEGREPGEWDTQTIKXMLXPPSETRSRK*SYTK 579
           PG+FEG E   W    +K +L    E  S+K   TK
Sbjct: 268 PGKFEGEEESSWGLGKLKKIL-KMLEKDSKKDEKTK 302


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 283 RTRNCRADGTWSQVW 327
           RTR    DG W++VW
Sbjct: 649 RTRESEVDGEWTRVW 663


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +2

Query: 185 DQPGQLVAAVTYGTGQGGSTVALASVPALLSPGAHETVVQTEPGPKSGSLQQRIAARVRH 364
           D+  ++V   T        +++L SVP+ +  G+    V+     K+G + +    +   
Sbjct: 54  DEEKEMVCLSTSIAENPYQSLSLESVPSKILFGSFLFYVKDRIPEKAGYIIEEQFCKRLQ 113

Query: 365 HIDFDFLQXSPRIC 406
            ID+D    SP+ C
Sbjct: 114 QIDYDAYSFSPKEC 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,670
Number of Sequences: 5004
Number of extensions: 62581
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)