Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_O03
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    30   0.022
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.16 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 271 EGRDTCQGDGGAPLACP-IGDSRYKLAGLVAWGIGCGQ 161
           +G+D CQ D G P+        R    G+++WG  CG+
Sbjct: 340 KGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK 377



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -3

Query: 606 SFEEIIIHEDFNAKSXK----NDVALLRMHAPFNLAEHINMICLP 484
           S  ++IIH  ++         ND+ALL+        + +   CLP
Sbjct: 235 SINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLP 279


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 171 PMPQATSPANL*RLSPMGQARGAPPSPWQVSLPSCPP 281
           P   A  P      SP    RG+PP+P Q   P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 25.4 bits (53), Expect = 0.63
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +3

Query: 165 PHPMPQAT---SPANL*RLSPMGQARGAPPS--PWQVSLPSCPPAHTKLSCRRNLVPSLV 329
           PH  PQA    SP N  +  P G   GAPPS  P Q+ +      H      +  + S  
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPT 86

Query: 330 RCSSELQR 353
           +  S +Q+
Sbjct: 87  QLQSFMQQ 94


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 203 QVGRAGRLGHRVRA 162
           ++GR GR+G+R RA
Sbjct: 538 RIGRTGRVGNRGRA 551


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 215  TYGTGQGGSTVALASVPALLSPGAHETVVQTEP 313
            T G       +A  ++ +  SPG  +  +QT+P
Sbjct: 1267 TTGAAVYARVIAPTTITSSQSPGNQQQTIQTQP 1299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,257
Number of Sequences: 438
Number of extensions: 5411
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)