Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_O02
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 103 4e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 2e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 7e-08
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 48 1e-06
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 38 0.002
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 34 0.021
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 29 0.77
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 7.2
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.5
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 103 bits (246), Expect = 4e-23
Identities = 52/84 (61%), Positives = 59/84 (70%)
Frame = -3
Query: 547 LYANTVFSRGTHHVPWNRRPVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGSILASLST 368
LY N V S GT P + K L+P +++ + PERKYSVWIGGSILASLST
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSM-KVKIVAPPERKYSVWIGGSILASLST 351
Query: 367 FQQMWISKQEYDESGPSIVHRKCF 296
FQQMWISKQEYDESGP IV+RKCF
Sbjct: 352 FQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
Frame = -3
Query: 421 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 299
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 7e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 409 SVWIGGSILASLSTFQQMWISKQEYDESG 323
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/84 (32%), Positives = 49/84 (58%)
Frame = -3
Query: 547 LYANTVFSRGTHHVPWNRRPVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGSILASLST 368
LY+N V S G+ + +S + +++ PER ++ W+GGSILASLST
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKN-QVKIYASPERMHNAWLGGSILASLST 356
Query: 367 FQQMWISKQEYDESGPSIVHRKCF 296
F+++ I+ +EY ++ +++ R+ F
Sbjct: 357 FRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -3
Query: 424 PERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 323
P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 344 PRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 418 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 305
++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 382 QRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 528 FPXVPTMYPGIADPYAKGNHSSRPIDNED*DHCS--SQRGSTPYGSVDRSSPPSLPSNKC 355
FP P++ P AD +R + N D D S+ S D ++PPS+PS+ C
Sbjct: 40 FPVDPSLQPDEAD------EGTRLLGNSDSDLLEPPSEHSSNGEDDKDINNPPSMPSSVC 93
Query: 354 GS 349
S
Sbjct: 94 SS 95
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 403 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 302
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 426 SQRGSTPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 316
++ TP + PPS+PS++ R S ++ APP
Sbjct: 218 NESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 344 FRDPHLLEGREGGEDRSTDPYGVLPLWEEQXXXXXXXMGR 463
F HLL + G+D + + YG L W + +GR
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWISKLPGLLREIGR 836
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -1
Query: 429 SSQRGSTPYGSVDRSSPPSLPSNKCGSRNKS-TTSLAP--PLYTGSASK 292
SS S+P GS D PP+ N+S +T AP P Y S S+
Sbjct: 203 SSLEPSSPLGSEDECHPPTSDMQPTHELNESPSTPTAPDFPHYNSSPSE 251
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 473 ITALAPSTMKIKIIAPPREEVLRMDRWIDPRLPLYLPTNVDLETR-VRRVW 324
I A T K++ + + L ID + Y P N+DLE V + W
Sbjct: 346 ILAQMGGTEKVEDVLENVNDTLARSEEIDATIQTYNPQNIDLEDEAVEKEW 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,999
Number of Sequences: 5004
Number of extensions: 46372
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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