Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N24
         (1007 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       36   0.039
12_02_0299 - 17051570-17052474,17053542-17053755                       35   0.12 

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 36.3 bits (80), Expect = 0.039
 Identities = 18/44 (40%), Positives = 19/44 (43%)
 Frame = -2

Query: 973 PXXXXXXPXPXPXWGXXXPXTPLKGXXXPXPLXPGGEKXXPKPP 842
           P      P P P  G   P  P KG   P P  PGG+K  P PP
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPP-KGPSPPPPPPPGGKKGGPPPP 380



 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = -3

Query: 1005 PXTXPXXXXXPPXXGXXXPXXXPXGXXXXPXPX*RVXXXPXPXPPGXKKXXXNP 844
            P   P     PP      P   P      P P  +    P P PPG KK    P
Sbjct: 326  PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 34.7 bits (76), Expect = 0.12
 Identities = 27/95 (28%), Positives = 30/95 (31%)
 Frame = -3

Query: 888 PXPXPPGXKKXXXNPXXXXXXGPXXXXP*PPFLKXXFGGXPXXXGPXLXRPXNPXGXXAX 709
           P P PP        P       P    P PPFL       P    P    P  P      
Sbjct: 211 PWPWPP---IPFCTPRPWFPPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPF----P 263

Query: 708 VPLTPXXXXXXGPXXXVPPVXRXPXXP*PPVPMFP 604
           +P  P       P   +PP+   P  P PP P FP
Sbjct: 264 LPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFP 298



 Score = 29.5 bits (63), Expect = 4.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 713 PWFP*PPFXKXPXAPFXXFP 654
           PWFP  PF   P  PF  FP
Sbjct: 224 PWFPPIPFLTPPPPPFLPFP 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,854
Number of Sequences: 37544
Number of extensions: 262936
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2963829220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)