Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N23
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    33   0.31 
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76...    30   2.2  
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909     29   5.1  
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789...    29   6.7  
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093...    29   6.7  

>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
            9863016-9863674,9863749-9863852,9863950-9864192,
            9864262-9864376,9864696-9864909,9864995-9865511,
            9866439-9866448,9867363-9867551,9867755-9868084,
            9868639-9868872,9869303-9869743
          Length = 1171

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 245  PPVQTADDIAAQPPPRSQADIDYELKVRKFLEM 147
            PP++  DD++ Q PPR+ AD+   +K +  LEM
Sbjct: 1072 PPLEEPDDVSGQLPPRNGADLTGGVKEKVDLEM 1104


>03_01_0096 +
           763850-764027,764873-765189,765262-765433,765513-765586,
           765658-765835,765917-766026,766122-766221,766305-766391,
           766505-766681,766847-767120,767201-767362,767450-767665,
           767744-767781,768044-768102,768214-768339,768415-768540,
           768642-768695,768789-768851,768924-768986,769079-769141,
           769232-769732
          Length = 1045

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/87 (25%), Positives = 35/87 (40%)
 Frame = -1

Query: 332 LSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFL 153
           +++ ++ LGD  S   T NS    PY          D     P + Q D     KV++ L
Sbjct: 658 INRSLSALGDVISALATKNSHI--PYRNSKLTHLLQDSLELGPAKKQVDTAELQKVKQML 715

Query: 152 EMTKEDSDYEEKVRNFLAETTQYKRNR 72
           E  K+D   ++     L +  Q   N+
Sbjct: 716 ERAKQDIRLKDDSLRKLEDNCQNLENK 742


>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
          Length = 627

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 263 HP-YGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLE-MTKEDSDYEEKVRNFLAETT 90
           HP Y + PP  +A   AA PPP   +D + + ++ K +E + K   ++E  +R+   +  
Sbjct: 82  HPAYMHPPPFDSAPPPAAAPPP---SDPELQKRIDKVVEYIAKNGPEFEVVIRDKQHDNP 138

Query: 89  QY 84
            Y
Sbjct: 139 DY 140


>03_06_0762 +
           36078414-36078539,36078700-36078750,36078832-36078981,
           36079055-36079803,36079914-36080013,36080116-36080259,
           36080333-36080452,36080532-36080846
          Length = 584

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 302 GDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYE 123
           G +T   H  Q     G  PP  + DD    P P+S+  +    ++R+ LE  +E S+ +
Sbjct: 8   GSTTPPPHLHQLLSGTGAAPPPSSHDDAHPHPHPQSRRTVPAR-RLRQRLE--QEVSELK 64

Query: 122 EKVRN 108
           +++RN
Sbjct: 65  KQLRN 69


>01_06_0846 +
           32408333-32408484,32408560-32408926,32409021-32409301,
           32409877-32409931,32410137-32410331,32410417-32410569
          Length = 400

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 254 GYQPPVQTADDIAAQPPPRSQA 189
           G  PPVQT D   A PPP ++A
Sbjct: 230 GGAPPVQTQDQAQATPPPDTRA 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,300,323
Number of Sequences: 37544
Number of extensions: 220866
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)