Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_N21
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 332 4e-92
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 328 4e-91
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 138 8e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 1e-14
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.19
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.25
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.76
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 29 1.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.1
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 26 5.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 5.4
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 7.1
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.1
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 332 bits (815), Expect = 4e-92
Identities = 145/181 (80%), Positives = 164/181 (90%)
Frame = -2
Query: 675 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 496
LVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 263 LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLL 322
Query: 495 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 316
YRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCML
Sbjct: 323 YRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCML 382
Query: 315 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 383 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Query: 135 S 133
S
Sbjct: 443 S 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 328 bits (807), Expect = 4e-91
Identities = 145/181 (80%), Positives = 162/181 (89%)
Frame = -2
Query: 675 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 496
LVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 259 LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLL 318
Query: 495 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 316
YRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCML
Sbjct: 319 YRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCML 378
Query: 315 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 379 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
Query: 135 S 133
S
Sbjct: 439 S 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 138 bits (334), Expect = 8e-34
Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 3/183 (1%)
Frame = -2
Query: 675 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 496
+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L
Sbjct: 257 MVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAAL 316
Query: 495 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 316
+RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFI 368
Query: 315 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEV 145
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E
Sbjct: 369 GNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
Query: 144 GMD 136
G+D
Sbjct: 429 GID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.9 bits (176), Expect = 1e-14
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Frame = -2
Query: 675 LVPYPRIHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMA 508
L+P PR HF L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 260 LIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFIS 319
Query: 507 CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 328
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 320 ILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL--- 376
Query: 327 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 157
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +
Sbjct: 377 --MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINE 434
Query: 156 YE 151
YE
Sbjct: 435 YE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -3
Query: 623 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 444
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 443 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = -3
Query: 623 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 444
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 443 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 354
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.25
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -3
Query: 635 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 462
T S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 461 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 369
+ S P +N +T S TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 29.1 bits (62), Expect = 0.76
Identities = 28/97 (28%), Positives = 46/97 (47%)
Frame = -3
Query: 665 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 486
TPV++S++ T SS P T P + T+ ++ + +TPV ++ CT
Sbjct: 507 TPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
Query: 485 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 375
TS P T P S ++ S++ PV+ + TTS
Sbjct: 559 TSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/97 (25%), Positives = 44/97 (45%)
Frame = -3
Query: 665 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 486
TP++T++ T +S+P T + +P + T+ ++ + +TPV ++ CT
Sbjct: 420 TPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTS 476
Query: 485 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 375
TS P T + S P +N +T S TS
Sbjct: 477 TSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 26.2 bits (55), Expect = 5.4
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = -3
Query: 680 TNLCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAV 501
T + TP++T++ T +S+P T + +P + T+ ++ + +TPV +S +
Sbjct: 461 TPVTSTPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTIS 517
Query: 500 CCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 375
T VTS P T + + SVL S+ P++ + TTS
Sbjct: 518 SSTPVTSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.76
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = -3
Query: 656 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 477
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 476 PRM*TRPSLPSKPSVLSNSST 414
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 739 SSITVLEIRRALNGTSPSSRLTCALPPYPLPTGHVRASHL-CREGLP*TAFRRRDHKRML 563
S TV E R L +P+ + +PP PLP+ + H+ L R+D+ R
Sbjct: 3 SPCTVKEKRSTLRSVAPNPE-SSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRAS 61
Query: 562 RA 557
RA
Sbjct: 62 RA 63
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 451 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 630
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 631 RVRDQWEVDTGVR 669
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 579 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 454
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 287 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 114
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 113 EPKSTK 96
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 662 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 546
P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1242 PSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 637 RDQWEVDTGVRHKLVWNSVRSHSERVE 717
RDQW V T + +VWN + +E
Sbjct: 289 RDQWVVSTSSQKTIVWNLALPNDRAIE 315
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 625 DWRVRDQWEVDTGVRHKLVWNSVRSHSERVE 717
DW+V E++ G+RH+ + RS+ + ++
Sbjct: 432 DWKVIRNAEIERGLRHESLSEKFRSNEDMIK 462
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 629 QSSLPRRPTMNSFPSPRSQTHASSPPTR 546
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 683 QTNLCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*N 537
QT C T S S W +Q+ +P + N+F S ++ + PPT + N
Sbjct: 51 QTAACAT--SCSDWYPQQQTHMPHQ---NAFDSAKATAKMALPPTAFSN 94
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 474 WVRRHHGTAYSKPCTCHDGG 533
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 7.1
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = -1
Query: 745 DXSSITVLEIRRALNGTSPSSRLTCALPPY----PLPTGHVRASHLCREGLP*TAFRRRD 578
D S++ E A SPS+ T ALPP P T + + R G P A + R+
Sbjct: 425 DKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRGEP--AVQTRN 482
Query: 577 HKRMLRARQPDGEMRPP 527
H + R E P
Sbjct: 483 HSKRTRTATSSVEETTP 499
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -3
Query: 668 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 516
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 458 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 363
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 9.4
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -3
Query: 662 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 483
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 482 SYPRM*TRPSLPSKPSVLSNSSTG 411
+ P + P S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,496
Number of Sequences: 5004
Number of extensions: 68054
Number of successful extensions: 262
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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