Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N20
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    28   1.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    28   1.9  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    27   3.2  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 507 PNQPSSFTPEQL-AEIRKARLARVICDNTDIIDTV 406
           P+   S+  E L +E+RK RL  ++C+NT + + +
Sbjct: 197 PHSKGSYLKENLKSELRKGRLDELMCENTALKEKI 231


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +2

Query: 191 RTKLVPFTTSARCIYFFPKNGS--YEKLLTNCFAVPWKGTGSAHLLKSMLGKIPLRQATR 364
           +T +    T A C  F  KNGS  +E + TN      KG   A   K+   +     A R
Sbjct: 40  KTAIHALETDANCTIFVKKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAEAAAAAR 99


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 306 APPIC*SPCLVKYRCGKPHAGSVH-DRATP 392
           A PIC S C V+ R  +PH  +VH +  TP
Sbjct: 169 AQPIC-SECFVEIRRAEPHLPTVHANEPTP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,352
Number of Sequences: 5004
Number of extensions: 55179
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)