Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_N17
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 179 4e-46
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 176 4e-45
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 80 4e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 47 4e-06
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.26
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.7
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.5
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 179 bits (436), Expect = 4e-46
Identities = 75/109 (68%), Positives = 90/109 (82%)
Frame = -2
Query: 668 YPRIHXPLVTYAPVXXAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG 489
YPRIH PLVTY+P+ A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRG
Sbjct: 266 YPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRG 325
Query: 488 DVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLGQ 342
DV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG + +
Sbjct: 326 DVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAK 374
Score = 146 bits (353), Expect = 4e-36
Identities = 67/80 (83%), Positives = 72/80 (90%)
Frame = -3
Query: 373 PPWCPEATWAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 194
P P + AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFS
Sbjct: 364 PQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFS 423
Query: 193 EAREDLAALEKDYEEVGMDS 134
EAREDLAALE+DYEEVG DS
Sbjct: 424 EAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 176 bits (428), Expect = 4e-45
Identities = 75/109 (68%), Positives = 88/109 (80%)
Frame = -2
Query: 668 YPRIHXPLVTYAPVXXAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG 489
YPRIH PLVTYAP+ A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRG
Sbjct: 262 YPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRG 321
Query: 488 DVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLGQ 342
DV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++ +
Sbjct: 322 DVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAK 370
Score = 145 bits (352), Expect = 6e-36
Identities = 69/92 (75%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Frame = -3
Query: 406 PVSRSVSTTSHPPWCPEATW-AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 230
P + PP E + AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHW
Sbjct: 348 PTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407
Query: 229 YVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 134
YVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 408 YVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 79.8 bits (188), Expect = 4e-16
Identities = 35/99 (35%), Positives = 56/99 (56%)
Frame = -2
Query: 668 YPRIHXPLVTYAPVXXAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRG 489
+PR+H +V +AP+ + + +SV E+T F+ N MV DPRHG+Y+ L+RG
Sbjct: 260 FPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRG 319
Query: 488 DVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 372
V K+V+ I +++TK + FV+W P + PP
Sbjct: 320 KVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP 358
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Frame = -3
Query: 340 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 170
++ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL +
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 169 LEKDYEEVGMD 137
+ Y+E G+D
Sbjct: 421 EYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 46.8 bits (106), Expect = 4e-06
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = -2
Query: 665 PRIHXPLVTYAPVXXA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCML 498
PR H L +Y P E + +V ++ P NQMV +P + +++ +
Sbjct: 264 PRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDI 323
Query: 497 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 366
+G+ P DV+ ++ I+ +R F+ W P +V ++ + P +
Sbjct: 324 IQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYI 367
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 493 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 359
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 581 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 456
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 453 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 596
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 288 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 115
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 114 EPKSTK 97
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -3
Query: 598 SFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSS 419
S +P + T+ ++ + +TPV ++ CT TS P T + S P +N +
Sbjct: 417 SSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCT 474
Query: 418 TGVQPVSRSVSTTSHP 371
T S TS P
Sbjct: 475 TSTSIPYTSTPVTSTP 490
Score = 26.6 bits (56), Expect = 4.3
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -3
Query: 589 SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGV 410
+P + T+ ++ + +TPV ++ CT TS P T P S ++ S++
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTS 583
Query: 409 QPVSRSVSTTS 377
PV+ + TTS
Sbjct: 584 TPVTTTNCTTS 594
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 457 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 371
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 476 WVRRHHGTAYSKPCTCHDGG 535
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 460 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 365
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,759
Number of Sequences: 5004
Number of extensions: 59293
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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