Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N13
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   100   3e-22
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    99   4e-22
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   4.1  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  100 bits (239), Expect = 3e-22
 Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
 Frame = -1

Query: 793 RXGXGXMXXXCXXQXKGPXXNFQXGXRV*LALSATSPGVEXXXXXXXXXXXLAPGGHLGR 614
           R G G +      Q +GP   F     +  A     PGVE           LAPGGHLGR
Sbjct: 190 RAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFR-NIPGVEIVNVRRLNLLQLAPGGHLGR 248

Query: 613 FVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-K 437
           FVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    
Sbjct: 249 FVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308

Query: 436 RVIRA-TRKLNPLTN 395
           RV RA  +K NPL N
Sbjct: 309 RVKRAHVQKKNPLKN 323


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =   99 bits (238), Expect = 4e-22
 Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
 Frame = -1

Query: 793 RXGXGXMXXXCXXQXKGPXXNFQXGXRV*LALSATSPGVEXXXXXXXXXXXLAPGGHLGR 614
           R G G +      Q +GP   F     +  A     PGVE           LAPGGHLGR
Sbjct: 190 RAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFR-NIPGVEIVNVRRLNLLQLAPGGHLGR 248

Query: 613 FVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-K 437
           FVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    
Sbjct: 249 FVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308

Query: 436 RVIRA-TRKLNPLTN 395
           RV RA  +K NPL N
Sbjct: 309 RVKRAHVQKKNPLKN 323


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 387 AMLKLNPYAAVXEEESYLRAAQKEELE 307
           A+LK + Y ++ EEES  R  ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,036
Number of Sequences: 5004
Number of extensions: 38706
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)