Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N12
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406...    32   0.69 
07_03_1210 + 24903389-24903695,24904383-24904468,24904545-249046...    29   4.8  
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906...    29   6.4  

>05_05_0254 -
           23638544-23640090,23640280-23640408,23640619-23640626,
           23641442-23642682
          Length = 974

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 601 VARRLSCLAQCRRCPHLCRRWPCRLGLXRHPP 696
           V +RL CL   RR   +CR W   +   +HPP
Sbjct: 17  VHKRLPCLVDRRRMARVCRTWRAAVKGEQHPP 48


>07_03_1210 +
           24903389-24903695,24904383-24904468,24904545-24904649,
           24904737-24905531,24905719-24905941,24906318-24906712
          Length = 636

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 159 ADGSGVGNIA*TSLWTRWFLRSAVIDWCHSFVPDTGLA 272
           ADG G G  A      +W  R  V+DW  SF+P   LA
Sbjct: 69  ADGGGPGVFA-----RKWRSRREVVDWLASFLPAKSLA 101


>01_01_1144 -
           9066832-9066935,9067968-9068169,9068265-9068414,
           9068553-9068637,9069264-9069343,9069972-9070070
          Length = 239

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/67 (23%), Positives = 35/67 (52%)
 Frame = -1

Query: 256 GTKEWHQSITADLRNHLVHKLVQAIFPTPDPSAMLDKRMHNLVAYARKVEGDMYEMACTR 77
           G  E+ ++I A +R+  +++ +  + P  D ++ + K+M  ++    K+E   + +    
Sbjct: 157 GEVEYAKNICAFVRD--IYRELTLVVPLMDDNSEMKKKMETMLQSVVKIENACFSVHVRG 214

Query: 76  SEYYHLL 56
           SEY  LL
Sbjct: 215 SEYIPLL 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,998,596
Number of Sequences: 37544
Number of extensions: 337680
Number of successful extensions: 1013
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)