Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N09
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    29   0.77 
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    28   1.8  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    27   2.4  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   5.5  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 658 EEYKKQKKTLEDVVQPIIAKLY 593
           +EY+ ++K LE V  PI+AK+Y
Sbjct: 588 DEYEDKQKELEGVANPIMAKIY 609


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 658 EEYKKQKKTLEDVVQPIIAKLY 593
           +E++ ++K LE V  PI+AK+Y
Sbjct: 588 DEFEAKQKELESVANPIMAKIY 609


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 664 NSEEYKKQKKTLEDVVQPIIAKLY 593
           + EE++ Q++ L+ VV PI  KLY
Sbjct: 618 SKEEFEDQRQKLDAVVHPITQKLY 641


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 571 AVLHPGLGKVWR*WAAPHLQ 630
           A+L PG G  W+ W  P+L+
Sbjct: 3   AILFPGQGVDWKTWMQPYLE 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,704
Number of Sequences: 5004
Number of extensions: 48528
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)