Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N09
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.3  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   5.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 573  RPRGRRKMTTSRTSCNQTESQPNVISAQMAA 481
            RP  RR++  + T C+   SQ  VI + M +
Sbjct: 962  RPAYRRRLNVNETVCSDYFSQGGVIESIMVS 992


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 782 QNXLQDKXKLGAKVTDDDQAKMEEALDAAIKWLEDNQDAEF*RIQETEE 636
           QN L       +K TDDD    +      + WL+   +  F  ++E+ E
Sbjct: 209 QNRLYTNDSTSSK-TDDDSIDFDRMNSLGLSWLDQLTNLGFLGMKESVE 256


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 782 QNXLQDKXKLGAKVTDDDQAKMEEALDAAIKWLEDNQDAEF*RIQETEE 636
           QN L       +K TDDD    +      + WL+   +  F  ++E+ E
Sbjct: 247 QNRLYTNDSTSSK-TDDDSIDFDRMNSLGLSWLDQLTNLGFLGMKESVE 294


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 703 MQLLSG*KIIKMQNSEEYKKQ 641
           +Q +SG KIIK  +S  Y++Q
Sbjct: 348 LQFISGIKIIKQISSNIYERQ 368


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 201 DTGRLNRLMLSISMLTNAQLTIAFTKNTKC 290
           D   +N+L+   S +++A L +   K  KC
Sbjct: 93  DENGVNKLITECSAISDADLAVKSAKLLKC 122


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 89  NYLNYSANYELTNLQSLKQLNTYRTL 166
           NY NY+ NY   N  +    N Y+ L
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKL 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,083
Number of Sequences: 438
Number of extensions: 3785
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)