Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_N08
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 73 5e-14
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 4.3
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 7.5
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 26 7.5
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 7.5
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.9
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 25 9.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.9
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 25 9.9
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 25 9.9
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 72.9 bits (171), Expect = 5e-14
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Frame = -2
Query: 566 LIPRNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPC 387
++ +N CE V MDFD L A +SLGT ++IV++ I +++ FY +C C C
Sbjct: 324 ILNKNQCEQVTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVC 383
Query: 386 REGVSWMNKIIYRFVDGNASPKEI-DMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 210
R+GV + + + DG+A ++ DM + + C GD + + R+F
Sbjct: 384 RDGVEDVIETLKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRNFPD 443
Query: 209 ELERR 195
++ R
Sbjct: 444 QITFR 448
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 750 GAKRXSGTKLFNISGHVN 697
G GTKLF+ISG VN
Sbjct: 264 GRPNNRGTKLFSISGEVN 281
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 368 MNKIIYRFVDGNASPKEIDMLWEISKQIEG 279
+NK + ++VD +P E L+EIS Q+EG
Sbjct: 217 INKPVTKYVDN--TPVEFGWLYEISYQLEG 244
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -2
Query: 458 DIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE 282
D+V+A+ R+ + Y + GQ GV W+ + + P+ + ++E++K E
Sbjct: 709 DVVEAMFRIALIYLNGLLGQKRNISLGVQWLERAC-----KSKGPESVRAMYELAKIYE 762
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 246 RGSVAQSADRVPFDLFRNFPQHVDFF 323
+ +V Q+ + + F++FR +P H+ F
Sbjct: 142 QSAVNQALESIKFEVFREYPVHIQEF 167
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 263 LGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY**CNTRRTSTLH 108
LGD + Q L ++E + E ++ GP+ +R+Y +++ST H
Sbjct: 867 LGDEYLYSEQSLNHEEEEQMEEELSEIFSSGGPNVVDRVY----LKKSSTRH 914
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = -3
Query: 250 PRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAERQLFTLRVSKEPLYRER 71
P G Y P SSD RS G A S +R R + + PL+ R
Sbjct: 51 PPGTTTVVYQKDVPRSSDGSRSMTAGLGGFMVGALAGSVLRGHRAYYAPPPPRGPLFGPR 110
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 774 GGKGSHRSGAKRXSGTKLFNISGHVNTAVHR 682
GGKG + GAKR NI G A+ R
Sbjct: 7 GGKGLGKGGAKRHRKILRDNIQGITKPAIRR 37
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -2
Query: 377 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 225
VSW NK+ + GNA+ E +W++ + + + LG G +
Sbjct: 168 VSWNNKVSHILASGNAT--EYTTVWDVKLKRQVLNLSYLGAAGVSAATGAV 216
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 774 GGKGSHRSGAKRXSGTKLFNISGHVNTAVHR 682
GGKG + GAKR NI G A+ R
Sbjct: 7 GGKGLGKGGAKRHRKILRDNIQGITKPAIRR 37
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 774 GGKGSHRSGAKRXSGTKLFNISGHVNTAVHR 682
GGKG + GAKR NI G A+ R
Sbjct: 7 GGKGLGKGGAKRHRKILRDNIQGITKPAIRR 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,135
Number of Sequences: 5004
Number of extensions: 62984
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -