Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_N08
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 215 4e-56
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717... 32 0.64
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 31 1.1
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 31 1.1
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 31 1.1
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 31 1.5
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 30 1.9
03_01_0358 + 2800784-2800808,2800870-2801396 29 5.9
02_02_0652 - 12651163-12653210,12653327-12653627 29 5.9
01_06_1475 + 37634831-37636297 29 5.9
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593... 28 7.8
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 28 7.8
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 215 bits (525), Expect = 4e-56
Identities = 105/169 (62%), Positives = 123/169 (72%)
Frame = -2
Query: 692 PCTVEEEMSIPLQGAHWEARGRSHPAAXXXXXXXXXXXXXXPLIPRNVCETVLMDFDGLV 513
PCTVEEEMSIPL+ + G PL+P+++C+ VLMD+D L
Sbjct: 336 PCTVEEEMSIPLKELIEKHCGGVR-GGWDNLLAIIPGGSSVPLLPKHICDDVLMDYDALK 394
Query: 512 AAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGN 333
A Q+ LGTAA+IVMDKSTD+V AIARL FYKHESCGQCTPCREG W+ I+ R GN
Sbjct: 395 AVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 454
Query: 332 ASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 186
A +EIDML E++KQIEGHTICALGD AAWPVQGLIRHFRPELERR++E
Sbjct: 455 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRE 503
Score = 41.5 bits (93), Expect = 8e-04
Identities = 27/57 (47%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -1
Query: 750 GAKRXSGTKLFNISGHVN---TAVHRGGGDEHPAXRSSLGGTRAESPGGWDNLLAII 589
G K SGTKLF +SGHVN T GG R GGWDNLLAII
Sbjct: 317 GRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVR----GGWDNLLAII 369
>02_02_0581 +
11770511-11770527,11770754-11771612,11771652-11771749,
11772903-11773631,11775159-11775231,11775698-11776066,
11777009-11777038
Length = 724
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -3
Query: 313 TCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSA 134
T + R K K TRS L + +G + GPS++DA T P +G A +A +
Sbjct: 632 TARSEMRGKRKRTRSKLQQSRGQGCWPIAIHVIGPSTADARHPTAPLSGAAAAAAAIQAT 691
Query: 133 IRA 125
A
Sbjct: 692 TAA 694
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -2
Query: 425 FYKHESCGQCTPCREGVSW--MNKIIYRFVDGNASPKEIDMLWEISKQIE 282
+Y+++ PC EGV W M+KI G+AS ++ID+L ++ +E
Sbjct: 226 YYRYDGSLTTPPCTEGVIWTIMSKI------GDASKEQIDLLKTVATTVE 269
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = -3
Query: 340 MVMLHRKKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRA 161
+++L +K+ST R G+R + RG S+ + G +S + ST A
Sbjct: 352 VIILSKKQSTLEEPTRPGVPGSRYRRRSYGTRGGGGGSHFSVGSTSGTSSPSTSTTASHA 411
Query: 160 KPSACTSSAIRAERQLFTLRVSKEPLYRE 74
SA +++ T+R PL+RE
Sbjct: 412 TTSAASNAMTTTTSSTHTMRSQGLPLHRE 440
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 612 SRRVTPPACLPMSSLXRDAHLLLHGARRCSRDPIY*TASCQXYVW 746
+R+ + LP + +D HLL A +CS D ++ + Y+W
Sbjct: 374 ARKHLAASVLPGAEWRKDGHLLYEAAGKCSEDAPSISSGSESYIW 418
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = -1
Query: 777 AGGKGSHRSGAKRXSGTKLFNISGHVNTAVHRG----GGDEHPAXRSSLGGTRAESPGG 613
A G G SGAK+ G N G N A G GG HPA GG + GG
Sbjct: 287 AAGGGKKDSGAKQNQGGGGKNGGGQPNNAKGGGGAPNGGGNHPAQGKKGGGGQGGGVGG 345
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 284 EGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERL 147
EG T+C + A PV+ + R P++ R + E +HG S+ E L
Sbjct: 148 EGRTMCKVAAKTA-PVRRIERAVDPDIARLLDETDVSHGGSEDEGL 192
>03_01_0358 + 2800784-2800808,2800870-2801396
Length = 183
Score = 28.7 bits (61), Expect = 5.9
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Frame = -1
Query: 768 KGSHRSGAKRXSGTKLFNISGHVNTAV-HR------GGGDEHPAXRSSLGGTRAESPGGW 610
+G RS R G KL + A HR GGGDE A +LGG E GG
Sbjct: 46 RGERRSRRARGGGEKLDGGGNELELAGDHRDREELDGGGDELDAAPPALGGDELELAGGV 105
Query: 609 DNLLAIITRRLLDPAHTQERLRDS--VDGLRRSSSRADLPGHGG 484
+A + D + R R + + G RR + DLP G
Sbjct: 106 WCWIAGGEAEIGDGGRSISRRRQAWGIGGDRRRRA-LDLPSVAG 148
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 128 AYCTTSTGARLCSA---RARPSTPACVARARAGSDV*VPAPATRLR 256
+Y TT++GA+ A R P+T A +A + + + + PAP+T +
Sbjct: 123 SYATTTSGAKSIPAATERVFPATKASLASSTSSTTMTTPAPSTETK 168
>01_06_1475 + 37634831-37636297
Length = 488
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 271 SALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSAC 146
+A AT P R + V P + DAC+ P+T A S C
Sbjct: 126 TACGATAPFNPVRSTTVADVPCTDDACQQFAPQTCGAGASEC 167
>04_04_0432 +
25157722-25157950,25158045-25158659,25159298-25159380,
25159906-25159979,25160101-25160151,25160295-25160371,
25160856-25161595
Length = 622
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = -1
Query: 774 GGKGSHRSGAKRXSGTKLFNISGHVNTAVHRGGGDEHPAXRSSLGGTRAESPGGWDNLLA 595
GG G+ + + G L +G V A GGG A SS R +SPGG +
Sbjct: 208 GGGGAGGTASSHGQGLALSMSTGSVAAA--GGGGAVVAAESSSSENKRVDSPGG--AVDG 263
Query: 594 IITRRLLDPAHTQERLRDSVDG 529
+ R+ +D + + +DG
Sbjct: 264 AVPRKSIDTFGQRTSIYRGIDG 285
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 614 PPGDSARVPPNELLXAGCSSPPPRCT 691
PPG ++ + P+ L AG S PP T
Sbjct: 27 PPGGNSMIMPSSLTTAGTSQSPPDAT 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,508,807
Number of Sequences: 37544
Number of extensions: 558894
Number of successful extensions: 2065
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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