Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N05
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    39   0.005
AF000262-5|AAN60522.1|  100|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z32840-3|CAB63430.2|  457|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = -1

Query: 726 RSVDDRRHAEEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREIRYLK 547
           ++ + +   + QN+ AATRYR+             + L   + +L ++ S+L+REIRY K
Sbjct: 136 KTPEKKERKKAQNRLAATRYREKKRREKEEAMTCIEGLSVTNGKLKDQVSELEREIRYFK 195

Query: 546 ALMRDL 529
             M ++
Sbjct: 196 KFMTEM 201


>AF000262-5|AAN60522.1|  100|Caenorhabditis elegans Hypothetical
           protein C48E7.11 protein.
          Length = 100

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = -1

Query: 717 DDRRHAEEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREIRYLKALM 538
           DD     ++N  A  R RQ               L++ +  L  K   LQ+E+ +LK + 
Sbjct: 18  DDYSTKRKRNNEAVNRTRQKKRQEENDTAEKVDELKKENETLERKVEQLQKELSFLKEMF 77

Query: 537 RDLFKAKG 514
               K  G
Sbjct: 78  MAYAKNDG 85


>Z32840-3|CAB63430.2|  457|Caenorhabditis elegans Hypothetical
           protein C07G2.2a protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 717 DDRRHAE-EQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREIRYLKAL 541
           D+RR+   E+NK AA RYR+             Q +     +L  +   L+RE+  + AL
Sbjct: 342 DERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLTQNQVLRRELERVTAL 401

Query: 540 MRD 532
           + +
Sbjct: 402 LTE 404


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 765 STDEXXPHRHVETRSVDDRRHAEEQNKNAATRY 667
           S DE   H H+ + +V    H++  N+N AT Y
Sbjct: 859 SHDESRAHSHMLSNTVQTHTHSQLINQNQATHY 891


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,580
Number of Sequences: 27780
Number of extensions: 263109
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)