Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_N03
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 251 8e-68
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 250 2e-67
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 87 2e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 56 4e-09
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 35 0.012
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 4.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 251 bits (615), Expect = 8e-68
Identities = 118/180 (65%), Positives = 140/180 (77%), Gaps = 1/180 (0%)
Frame = -1
Query: 667 YPRIHFPLVTYAPVISAEKAYP*TAFRRPRSQTHASSPPTRW*NATPVMASTWLAVCCT- 491
YPRIHFPLVTY+P++SA KA+ + + T+ P ++A C
Sbjct: 266 YPRIHFPLVTYSPIVSAAKAFHES--NSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLY 323
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLS
Sbjct: 324 RGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLS 383
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 131
NTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = -2
Query: 744 SSITAXXRFDGALNVDLTEFQTNLVXTP 661
SSITA RF G+LNVDL EFQTNLV P
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYP 267
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 250 bits (611), Expect = 2e-67
Identities = 119/180 (66%), Positives = 139/180 (77%), Gaps = 1/180 (0%)
Frame = -1
Query: 667 YPRIHFPLVTYAPVISAEKAYP*TAFRRPRSQTHASSPPTRW*NATPVMASTWLAVCCT- 491
YPRIHFPLVTYAP++SA KA+ + + T+ P A ++A C
Sbjct: 262 YPRIHFPLVTYAPIVSAAKAFHES--NSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLY 319
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLS
Sbjct: 320 RGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLS 379
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 131
NTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2
Query: 744 SSITAXXRFDGALNVDLTEFQTNLVXTP 661
SSITA RF+G+LNVDL EFQTNLV P
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYP 263
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 87.4 bits (207), Expect = 2e-18
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 3/181 (1%)
Frame = -1
Query: 667 YPRIHFPLVTYAPVISAEKAYP*TAFRRPRSQTHASSPPTRW*NATPVMASTWLAVCCTR 488
+PR+HF +V +AP ++A + A P A P R
Sbjct: 260 FPRLHFFMVGFAP-LAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFR 318
Query: 487 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN 308
G V K+V+ I +++TK + FV+W P + PP DL + + + N
Sbjct: 319 GKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGN 370
Query: 307 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGM 137
+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+
Sbjct: 371 STSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGI 430
Query: 136 D 134
D
Sbjct: 431 D 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 56.4 bits (130), Expect = 4e-09
Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Frame = -1
Query: 664 PRIHFPLVTYAPVISAEKAYP*TAFRRPRS---QTHASSPPTRW*NATPVMASTWLAVC- 497
PR HF L +Y P + ++ A R+ P + + P S ++++
Sbjct: 264 PRCHFLLTSYTPFTN-QQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILD 322
Query: 496 CTRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 317
+G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 316 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 149
L+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 498 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 355
A PVV P + RP++P P LS V PV+ V + PP P
Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 498 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 355
A PVV P + RP++P P S PV V + PP P
Sbjct: 639 AAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 495 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 349
VP V S P+ P +P PSV + V P SV P PEA
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEA 691
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 492 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 352
P V S P+ P +P PSV + V P + SV P PE
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 495 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 352
VP S P+ P +P PSV + V P + SV P PE
Sbjct: 628 VPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 675
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -2
Query: 495 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 352
VP S P+ P P PSV + V P + SV P PE
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -2
Query: 492 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 349
P V S P+ P +P PSV + V P SV P PEA
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 111 EPKSTK 94
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 714 GALNVDLTEFQTNLVXTPVSTSHWSRTRQSSLPRRPTHEQLSVARDHKRMLRARQPD 544
G + T + + P + +T Q LP PT E + +AR ++ +RA+QP+
Sbjct: 337 GVTHEATTSARASASGIPGAFEEVQQTVQEDLPH-PTAETVEIARFAEQPVRAQQPE 392
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 453 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 367
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 5.4
Identities = 26/101 (25%), Positives = 40/101 (39%)
Frame = -2
Query: 492 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVXXXXX 313
PVV + P T+P S P+ S + PVS + T + PP A R N
Sbjct: 988 PVVQNKPAA-TKPV--SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAA 1042
Query: 312 XXXXXXPKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP 190
+ A T S++ PS ++ +S + S+P
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 638 RDQWEVDTGVXTKLVWNSVRSTFRA 712
RDQW V T +VWN RA
Sbjct: 289 RDQWVVSTSSQKTIVWNLALPNDRA 313
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 456 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 361
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,188
Number of Sequences: 5004
Number of extensions: 71132
Number of successful extensions: 262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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