Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_N02
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.4  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    28   1.8  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   5.6  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   7.4  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 355  VHTSFI-DIDIDNSVVQYRLNGIQIKAPVPNG 263
            V+ S+I DI+ +  V+Q RLNGI++   +P G
Sbjct: 1768 VYESYIRDIEKEIIVLQERLNGIELSQQLPKG 1799


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 442 LFEERKQK-KNASTTLKSKLSQSCVSFQGGVHTSFIDIDIDNSVVQYRLNGIQIK 281
           L+E  KQ  +NA T L SKL ++CV +   V     DI + +++    L+ + ++
Sbjct: 160 LYETAKQLLQNADTDL-SKLEKTCVQYMNSVQNFPTDIPVPSNLSISNLDVVSVE 213


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 436 EERKQKKNASTTLKSKLSQSCVSFQGGVHTSFIDIDIDN 320
           E++     +S  +KS +S + ++    +H SF   DID+
Sbjct: 141 EQKHSTTPSSLKMKSSISLAAITADDSLHNSFSSNDIDD 179


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 611 VTQFGTGTPDVTLHLSGFQRVVGNQQDQPSHSICRHSTD 727
           +  F TG     LH S   RV G Q D      C HS++
Sbjct: 453 IWNFNTGEQHCVLHNSRNSRVFGLQFDHRRIIACTHSSE 491


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 198 YCTGFCNSFIE*IK 157
           YC  FCN+FIE +K
Sbjct: 93  YCLPFCNAFIEFVK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,376
Number of Sequences: 5004
Number of extensions: 58569
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)