Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_N02
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 30 2.3
Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF016415-3|AAW88418.1| 658|Caenorhabditis elegans Hypothetical ... 29 4.0
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 29 5.3
AF068720-2|AAC17787.1| 346|Caenorhabditis elegans Seven tm rece... 29 5.3
AL022716-2|CAA18772.1| 373|Caenorhabditis elegans Hypothetical ... 28 7.0
AL022716-1|CAA18770.1| 371|Caenorhabditis elegans Hypothetical ... 28 7.0
AF003739-6|ABP57817.1| 163|Caenorhabditis elegans Hypothetical ... 28 7.0
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 28 9.2
>AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical
protein E04A4.6 protein.
Length = 466
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 321 LSISISIKLVCTPPWKLTQDCDNLLFKVVDAFFFCFLSSNNYKSICCTYITIILIVN 491
+ ISIS V PP + + ++ FF+ F+S++NY S Y + ++VN
Sbjct: 409 MPISISFTEVTPPPKNIFSALPYVDIRLPHDFFYPFMSTSNY-SASLNYSQLFILVN 464
>Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical
protein F28H7.11 protein.
Length = 336
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 204 YEYCTGFCNSFIE*IKFGGKYSFCSKLTYFLVIFTLWNAIYGF 76
Y Y T FC++F+E ++ + + Y L + +LW I GF
Sbjct: 112 YRYMTLFCHNFLE--RYFLPHGIVVSVIYCLGLMSLWTFIAGF 152
>AF016415-3|AAW88418.1| 658|Caenorhabditis elegans Hypothetical
protein C02A12.8 protein.
Length = 658
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/94 (25%), Positives = 42/94 (44%)
Frame = +3
Query: 294 PFNRY*TTLLSISISIKLVCTPPWKLTQDCDNLLFKVVDAFFFCFLSSNNYKSICCTYIT 473
P Y L+++++ + VC P+K+ L VV AF S +N T
Sbjct: 240 PTRTYNDDLVTVALVVLGVCLLPYKINVLLTRPLVTVVTAFIIKLESESNQILNSKTLSY 299
Query: 474 IILIVNLIFFMHFIFRSSAISRQ*NNYVTFLLFT 575
I I +++ +H+ S +S N+YV ++ T
Sbjct: 300 IGDISYVMYLVHWPIISIFLSSNVNSYVFCVVTT 333
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +3
Query: 369 LTQDCDNLLFKVVDAFFFCFLSSNNYKSICCTYITIILIVNLIFFMHFIFRSSAIS 536
L Q+ +L+ V+ F CF+ N Y + +I + + ++I F++ S+++
Sbjct: 49 LAQNVVSLINLVIQLFCVCFIWKNGYLKLSTFFIILFIHSSIISLRVFVYIISSLA 104
>AF068720-2|AAC17787.1| 346|Caenorhabditis elegans Seven tm
receptor protein 240 protein.
Length = 346
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 381 CDNLLFKVVDAFFFCFLSSNNYKSICCTYITIILIVNLIFFMHFIFRSSAIS 536
C + +F V+ + L YK I + T + IF +HFI+R A+S
Sbjct: 68 CFDSMFLVITFYENSSLPRWIYKVINVVFCTFFAVSMAIFALHFIYRYLAVS 119
>AL022716-2|CAA18772.1| 373|Caenorhabditis elegans Hypothetical
protein C24F3.1b protein.
Length = 373
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 509 FHISKFRHFTPVK*LCD-LFTLYSGRGAVVRI 601
FHI++F HF K L D F L++G +VR+
Sbjct: 244 FHIARFAHFVGRKGLSDPAFKLFNGSFVLVRL 275
>AL022716-1|CAA18770.1| 371|Caenorhabditis elegans Hypothetical
protein C24F3.1a protein.
Length = 371
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 509 FHISKFRHFTPVK*LCD-LFTLYSGRGAVVRI 601
FHI++F HF K L D F L++G +VR+
Sbjct: 242 FHIARFAHFVGRKGLSDPAFKLFNGSFVLVRL 273
>AF003739-6|ABP57817.1| 163|Caenorhabditis elegans Hypothetical
protein M01D7.9 protein.
Length = 163
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 442 LFEERKQ-KKNASTTLKSKLSQSCVSFQGGVHTSFIDIDIDNSVVQYRLNGIQIKAPVPN 266
LFE KQ +K +++T S + +F V + F+D D + +N + + AP+P
Sbjct: 61 LFELYKQTRKMSNSTFSSHRFMATWAFWV-VISYFLDPSTDTRAISTFINSLFVAAPIPG 119
Query: 265 GLHNTMPNIKYK 230
+ + N Y+
Sbjct: 120 TVAMIIQNASYR 131
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 400 LKSKLSQSCVSFQGGVHTSFIDIDIDNSVVQYRLNGIQIKAPVPN 266
LK+ ++ V F G+ +++D+DN V N I K P+ N
Sbjct: 72 LKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGNPIDGKGPIAN 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,376
Number of Sequences: 27780
Number of extensions: 333295
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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