Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_N01
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 41 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.3
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 5.2
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 6.9
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 26 6.9
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 6.9
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 6.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.1
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 9.1
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 9.1
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -3
Query: 657 FEGVQKCKLDETLFDVMERIVRAEVHRLXXXXXXXXVIGIISLSDLLMYLVLRPTGECGV 478
F+GV C+ + L + + I + VHRL + GI+SL+D+L Y++ T GV
Sbjct: 264 FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGV 323
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 767 TFXNXYXXFDVINLAAEKTYNNLDVTL 687
T N Y DV++L + Y+NLD+++
Sbjct: 227 TLLNVYESVDVMHLIQDGDYSNLDLSV 253
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 447 EEKDENLNPEDVAESGD---DKSTVSKEQDDSEERTQCPRVKQMRF 319
E ++E N +DV +SGD DK++++ E D+E V+ + F
Sbjct: 241 ESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLF 286
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = -3
Query: 468 RNEHAPIEEKDENLNPEDVAESGDDKSTVSKEQDDSEERTQCPRVKQMRFRVFN---LVN 298
+NEH D N + + + DD VS + +E++ +C R F VF+ +
Sbjct: 766 QNEHEIQTSVDPISNVKAILPNADD---VSSKNSSTEDQLECLRCGNSLFNVFSRSFVFE 822
Query: 297 GFAISITTPFC 265
G SI C
Sbjct: 823 GAKFSIVCSHC 833
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 522 LLMYLVLRPTGECGVTSLRNEHAPIEEKD 436
L+MY + P E S+ N + PIE D
Sbjct: 173 LIMYFFVLPESESTSPSINNNYTPIESID 201
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 477 TSLRNEHAPIEEKDENL-NPEDVAESGDDKSTVSKEQDDSEERTQCPRVKQMR 322
T ++NE + EKD+ + EDV ES D+S + + EE T R+ ++
Sbjct: 11 TEVQNEQQTVIEKDQYIYAQEDVEESDSDES----DFEGLEEETIIDRIAALK 59
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 477 TSLRNEHAPIEEKDENLNPEDVAESGDDKSTVSKEQDDSE 358
T+L N + E +N E+ SGD ++ K+ DDS+
Sbjct: 129 TNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQCDDSK 168
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 617 SMLWKESFGPRYIV*LSSMMTIKSSELYLS 528
S LW+++ + I+ +S +T+K SEL LS
Sbjct: 112 SKLWEDNRRLKKIIKYTSYVTVKGSELILS 141
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 707 NNLDVTLKRQTXIGTSGSRAFRNVNSTKHSSMLWKESFG 591
+++ L + +SGS F ++ST SS++ E+FG
Sbjct: 727 SSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETFG 765
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 450 IEEKDENL-NPEDVAESGDDKSTVSKEQDDSE 358
+E +DE + N +D+ E GD+ + V E DD +
Sbjct: 359 LESEDEEVDNSDDIVEDGDN-AFVDDEDDDKD 389
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = -3
Query: 462 EHAPIEEKDENLNPEDVAESGDDKSTVSKEQDDSEERTQCPRVKQMRFRVFNLVNG 295
E IE ++++ +++ E+ + +T + SEE Q P+VK + +++NG
Sbjct: 740 ERDDIEVEEDDAEAQEL-ENDNTNTTNGNDNVSSEEALQKPKVKITYDKYVSIMNG 794
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,604
Number of Sequences: 5004
Number of extensions: 56211
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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