Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M23
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    51   2e-07
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.0  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = -2

Query: 604 PQTARQVHLYRGVLPIVYQEPTASDWLKDVDNRVQSG 494
           PQ ARQ HL RGV P++Y++   SDW KDVD RV  G
Sbjct: 435 PQRARQSHLNRGVYPVIYEKEPLSDWQKDVDARVAYG 471



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = -3

Query: 732 GMLGSRKGVNLPGIPXDLPAVSEKDKS 652
           G + S+KGVNLP    DLPA+SEKDK+
Sbjct: 178 GKISSKKGVNLPKTDVDLPALSEKDKA 204



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 666 EKDKSAIVVITTSGKSAHQAPRRPPGRCTSTAACCP 559
           E D  AIVV++TSG +A    +  P         CP
Sbjct: 400 ESDAKAIVVLSTSGNTARLCSKYRPSIPIVMVTRCP 435


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 591 LAVCGVPGAPTCR 629
           + +CG+PGAP C+
Sbjct: 24  IKLCGIPGAPACK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,075
Number of Sequences: 5004
Number of extensions: 57167
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)