Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M23
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969...    42   6e-04
03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328     41   0.001
04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908     41   0.001
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478...    29   4.8  
03_04_0237 - 19201789-19202421                                         29   4.8  
09_04_0310 + 16578679-16580936,16581027-16581294                       28   8.3  
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814     28   8.3  

>01_01_1205 -
           9693702-9694517,9694591-9695076,9697014-9697095,
           9697876-9698051,9698326-9698580
          Length = 604

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -3

Query: 729 MLGSRKGVNLPGIPXDLPAVSEKDKSAIV 643
           MLG RK VNLPG+  DLP ++EKDK  I+
Sbjct: 264 MLGERKNVNLPGVIVDLPTLTEKDKEDIL 292


>03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328
          Length = 448

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -3

Query: 729 MLGSRKGVNLPGIPXDLPAVSEKDKSAIV 643
           MLG RK VNLPG+  DLP ++EKDK  I+
Sbjct: 155 MLGERKNVNLPGVIVDLPTLTEKDKVDIL 183


>04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908
          Length = 511

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = -3

Query: 729 MLGSRKGVNLPGIPXDLPAVSEKDKSAIV 643
           MLG RK  NLPGI  DLP ++EKDK  I+
Sbjct: 172 MLGERKNCNLPGIVVDLPTLTEKDKEDIL 200


>11_01_0600 -
           4780579-4780839,4781256-4781324,4781535-4781598,
           4781791-4781919,4782234-4782541
          Length = 276

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 544 PTASDWLKDVDNRVQSGLRFGRQRGFVHPRGQRGRRHR 431
           P  S  + D  + +Q G+R GR+R ++  R +R  R R
Sbjct: 26  PQRSPGIADFGDELQRGVRHGRRRTWLRRRARRRERRR 63


>03_04_0237 - 19201789-19202421
          Length = 210

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 627 GKSAHQAPRRPPGRCTSTAACCP 559
           G  AH  P RPPGRC+      P
Sbjct: 3   GSEAHIRPERPPGRCSPMEGSWP 25


>09_04_0310 + 16578679-16580936,16581027-16581294
          Length = 841

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 702 LPGIPXDLPAVSEKDKSAIVVITTSGKSAHQAPRRPPG 589
           LP +P   P  +    +A       GK A +AP  PPG
Sbjct: 114 LPNLPTAAPPRAAGSGAAAAAAAAGGKPASRAPGAPPG 151


>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
          Length = 775

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 448 RGRRHRLEAGLRLHQHRPGHSIGIMTKLQRRRKSAFVL 335
           R RRH  E  L LH H P     ++T    RR  A VL
Sbjct: 54  RPRRHHHEDSLPLHVHLPPPPDALLTAAADRRSRADVL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,118,611
Number of Sequences: 37544
Number of extensions: 388114
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)