Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M21
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   2.3  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   2.3  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   9.4  

>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 458 PDPSLYGRGPSTKNASDHTFLF 393
           P+P+L    P+T+ AS++T+L+
Sbjct: 174 PEPALLPEAPNTREASNNTYLY 195


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 368 HREGGV*FQIGTYGRKHFLLTDLVHKDLGL 457
           ++E G+  ++G+YG  ++  T  VH +LG+
Sbjct: 470 YKESGIGRELGSYGLTNYTQTKAVHINLGM 499


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 522 NLGHAKVKQLSNSPRSPYCILNIFSW*FFSRSTCWMDSSTHWGCKTKQMASNGTF 686
           N  H+     SN P S      + +  F S   CW   + H GC+T  M +   F
Sbjct: 276 NYDHSSSPGKSNYPPSLCTERKVLNKIFDSLLGCWPSPTRHVGCRTFFMVTVSRF 330


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 634 ESIQQVLREKNY-HEKMFKMQYGDLGEFESCFTFACPKFLSA 512
           E++ +  +++N  HEK+ +    +L E  S F FA   F+SA
Sbjct: 228 ENLLRKEKQRNTEHEKIIRRMKKELKELHSQFNFAKKLFISA 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,833
Number of Sequences: 5004
Number of extensions: 69671
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)