Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_M21
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 148 6e-36
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 137 8e-33
01_06_0861 - 32528419-32529102 29 3.2
12_02_1024 - 25449163-25449824,25451882-25452191 28 7.4
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337 28 7.4
02_05_0081 + 25671014-25671200,25672490-25672796,25673508-256736... 28 9.7
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379... 28 9.7
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 148 bits (358), Expect = 6e-36
Identities = 83/210 (39%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Frame = -2
Query: 673 LAICLVLHPQ--CVDESIQQVLREKNYHEKMFKMQYGD---LGEFESCFTFACPKFLSAC 509
LA+CL L PQ +DE++ L+EK Y++KM KMQ D ++ F++ACPKF++
Sbjct: 331 LAVCLSLCPQHNLIDENVSTQLKEK-YNDKMTKMQRFDEETYAAYDELFSYACPKFITPS 389
Query: 508 PPPIE-PGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARG 332
PP ++ P NY +DA + Q ++F+ EV+QQ++L IRSYLKLY+T+ +AKLA +M
Sbjct: 390 PPALDQPLTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITIAKLAQYMEVDEA 449
Query: 331 SERDAAREHAALAIH---LLCFKHKMKNVVWXKGPSGLDGKFQSGSELDFYIDNDMIHIA 161
+ R A ++ + ++ L+ +KHKM V +GK S ++ DFYI D+IH+
Sbjct: 450 TLR--AMKNLSQYLYRSILMTYKHKMHAV-------DNNGKIVSSADFDFYIKEDVIHVM 500
Query: 160 DTKVAHRYGDFFIRKLLKFEELNRKLHHIK 71
++K R+GD+F+R++LKFEE+ +L ++
Sbjct: 501 ESKPIKRHGDYFLRQILKFEEMIGELEKVQ 530
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 137 bits (332), Expect = 8e-33
Identities = 85/220 (38%), Positives = 131/220 (59%), Gaps = 18/220 (8%)
Frame = -2
Query: 676 LLAICLVLHPQ--CVDESIQQVLREKNYHEKMFKM-QYGD--LGEFESCFTFACPKFLSA 512
LLAICL L PQ +DE++ L+EK Y +KM KM +Y D ++ F++ACPKF++A
Sbjct: 310 LLAICLSLCPQDKLIDENVGTQLKEK-YGDKMTKMHRYDDEAYAIYDELFSYACPKFITA 368
Query: 511 CPPPI-EPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAAR 335
PP + EP NY +DA + Q ++F+ EV+QQ++L IRSYLKLY+T+ + KLA +M
Sbjct: 369 SPPVLREPYTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITIGKLAKYMDV-- 426
Query: 334 GSERDAAREHAALAIHLLCFKHKMKNVVWXKGPSGLDGKFQSGSELDFYID--------- 182
+ L L+ +KHKM ++ DGK S ++ DFYID
Sbjct: 427 --------DEVTLRTILMTYKHKMHSI-------DSDGKVISSADFDFYIDECMQQPLVW 471
Query: 181 ---NDMIHIADTKVAHRYGDFFIRKLLKFEELNRKLHHIK 71
D+IH+ ++K+ +GD+F+R++LKFEE+ +L ++
Sbjct: 472 FPAEDIIHVVESKLTKNHGDYFLRQILKFEEMITQLDKVQ 511
>01_06_0861 - 32528419-32529102
Length = 227
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 269 VLEAEQVNGESRMFTCRVTLTAASSRHECS*FRHREGGV*FQIGTYGRKH 418
++ E + E R+ T R T + S + + HR GG+ F+ TYGR H
Sbjct: 3 IVGEEYCSAEERVLTVRKT-SHFSPGDGFAAYDHRTGGLAFRADTYGRGH 51
>12_02_1024 - 25449163-25449824,25451882-25452191
Length = 323
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 731 PPVPTXMIRSTNRXSKCTITGHLFGLASPVR**IHPAGAS 612
PP P ST R KC +G L A+P + PA A+
Sbjct: 226 PPPPAKPCSSTKRPKKCNTSGDLGAAAAPPQAVDTPAAAA 265
>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
Length = 200
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 361 LAAFMSAARGSERDAAREHAALAIHLLCFKHKMKNVVW 248
LA F A G+ AA A+HLLCF VW
Sbjct: 6 LAVFFLLAGGAGLGMTAAAAAKAVHLLCFATSWGVTVW 43
>02_05_0081 +
25671014-25671200,25672490-25672796,25673508-25673637,
25677283-25677477
Length = 272
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -3
Query: 723 SYQXDQINX-QTEQMYHYWPFVWSCIPSALMNPSS 622
S Q Q N Q + M H W WS P L+ P S
Sbjct: 203 SMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFS 237
>02_01_0524 +
3798019-3798265,3798419-3798651,3798765-3799014,
3799104-3799249,3799372-3799577,3799721-3799845,
3800154-3800734
Length = 595
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 481 YGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKL 386
YGR + + +E++Q+ M PT++S++ L
Sbjct: 395 YGRAGLHEDAEAVFEELKQRGMSPTMKSHMLL 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,832,337
Number of Sequences: 37544
Number of extensions: 508880
Number of successful extensions: 1218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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