Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M19
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    71   2e-13
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    65   9e-12
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    30   0.43 
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.4  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    25   9.4  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
 Frame = -3

Query: 615 SGIRPRDLARAXKTXRDVQNDIXGFVGTDTILIGHALENDLRALKLLHSAVVDTCALYPH 436
           SGI    L        DVQ+ +   V  +T+L+GH+L +DL  LK  H  ++DT  +Y H
Sbjct: 316 SGITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNH 375

Query: 435 ARGFPMXXXXXXXXXXXXXRTVQR-GSNGHSPLEDARAAMDLVLLKVQQEQA 283
            RG P              R +Q+ G+ GH   EDA A +DL+ LKV+   A
Sbjct: 376 TRGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLKLKVKNGPA 427


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 33/83 (39%), Positives = 47/83 (56%)
 Frame = -3

Query: 531 DTILIGHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGSNG 352
           +TILIGH LENDL A++L+H  V+DT  L+ HARG P               T+Q  ++ 
Sbjct: 458 NTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQ--TST 515

Query: 351 HSPLEDARAAMDLVLLKVQQEQA 283
           H   EDA +A+ LV  K +  ++
Sbjct: 516 HDSEEDAVSALQLVFYKTKSNES 538


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -3

Query: 525 ILIGHALENDLRALKLLH-SAVVDTCALYPHARGFPMXXXXXXXXXXXXXRTVQRGSNGH 349
           +L+GHA+ NDL+ L L H   ++   + +   R                       S  H
Sbjct: 170 VLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVILGRDIQSGQH 229

Query: 348 SPLEDARAAMDLVLLKVQQE 289
           S ++DA+A M+L   KV++E
Sbjct: 230 SSVQDAQATMEL-YKKVKKE 248


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 342 MASDHCCLFVQYGPEAPRIGRVVIGALGILVRVDIK 449
           +AS  C +  Q    A  +GR ++G L  ++  D+K
Sbjct: 17  IASSGCNILGQPSSSAKSVGRAIVGGLESVLEWDLK 52


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 425 NPRACGYKA-HVSTTALCNNFKARRSFSRACPIRIVSVPTNPXISFCTSRXVL-XARAKS 598
           N R  G+K  +V T+ L     A R  +    + ++  PTNP IS C  R ++   R+K+
Sbjct: 113 NQRQYGFKVDNVDTSDLAAFEAALRPDTN---LVLIESPTNPRISICDIRAIVKITRSKA 169

Query: 599 R 601
           +
Sbjct: 170 K 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,789
Number of Sequences: 5004
Number of extensions: 47367
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)