Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M18
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    26   5.8  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   5.8  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   7.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -3

Query: 159 VSSPGDYCSPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYSPY--RAYEKKK 7
           + +P D C    R    +A  K ++H G       F P N++ Y  R Y + +
Sbjct: 70  IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 333 ERNNLTWSIMHSLTPNRAAPAPEHDRLR 250
           E +N+ WSI+H +     AP  E   L+
Sbjct: 197 EDSNMAWSIIHKIKTEVVAPISEKKELK 224


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 393 SKLVSRHFEESLRLANQKRGERNNLTWSI 307
           SK+ +   E   RL N+++GE  NLT  I
Sbjct: 158 SKISNSQLEYQQRLINERQGEIENLTQGI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,384
Number of Sequences: 5004
Number of extensions: 39636
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)