Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_M17
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 330 2e-91
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 326 2e-90
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 138 9e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 2e-14
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.20
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.79
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.6
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.4
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 330 bits (810), Expect = 2e-91
Identities = 144/181 (79%), Positives = 164/181 (90%)
Frame = -3
Query: 675 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITSACFEPANQMVKCDPRHGKYMACCML 496
LVPYPRIHFPLVTY+P++SA KA+HE SV EIT+ CFEP NQMVKCDPR G+YMA C+L
Sbjct: 263 LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLL 322
Query: 495 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 316
YRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCML
Sbjct: 323 YRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCML 382
Query: 315 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 383 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Query: 135 S 133
S
Sbjct: 443 S 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 326 bits (802), Expect = 2e-90
Identities = 144/181 (79%), Positives = 162/181 (89%)
Frame = -3
Query: 675 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITSACFEPANQMVKCDPRHGKYMACCML 496
LVPYPRIHFPLVTYAP++SA KA+HE SV EIT+ CFEP NQMVKCDPR G+YMA C+L
Sbjct: 259 LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLL 318
Query: 495 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 316
YRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCML
Sbjct: 319 YRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCML 378
Query: 315 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 379 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
Query: 135 S 133
S
Sbjct: 439 S 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 138 bits (334), Expect = 9e-34
Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 3/183 (1%)
Frame = -3
Query: 675 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITSACFEPANQMVKCDPRHGKYMACCML 496
+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L
Sbjct: 257 MVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAAL 316
Query: 495 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 316
+RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFI 368
Query: 315 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEV 145
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E
Sbjct: 369 GNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
Query: 144 GMD 136
G+D
Sbjct: 429 GID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.5 bits (175), Expect = 2e-14
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Frame = -3
Query: 675 LVPYPRIHFPLVTYAPVISA---EKAYHEQLSVAEITSACFEPANQMVKCDP-RHGKYMA 508
L+P PR HF L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 260 LIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFIS 319
Query: 507 CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 328
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 320 ILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL--- 376
Query: 327 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 157
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +
Sbjct: 377 --MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINE 434
Query: 156 YE 151
YE
Sbjct: 435 YE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.20
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -1
Query: 623 SLPRRPTMNSFPSPRSQAHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 444
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 443 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = -1
Query: 623 SLPRRPTMNSFPSPRSQAHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 444
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 443 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 354
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.79
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = -1
Query: 656 STSHWSRTRQSSLPRRPTMNSFPSPRSQAHASSPPTRW*NATPVMASTWLAVCCTVVTSY 477
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 476 PRM*TRPSLPSKPSVLSNSST 414
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.0
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -1
Query: 635 TRQSSLPRRPTM--NSFPSPRSQAHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 462
T S+ P PT+ S +P + + ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 461 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 369
+ S P +N +T S TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 25.8 bits (54), Expect = 7.4
Identities = 24/97 (24%), Positives = 43/97 (44%)
Frame = -1
Query: 665 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQAHASSPPTRW*NATPVMASTWLAVCCTVV 486
TP++T++ T +S+P T + +P + + ++ + +TPV ++ CT
Sbjct: 420 TPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTS 476
Query: 485 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 375
TS P T + S P +N +T S TS
Sbjct: 477 TSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 579 ITSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 454
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 451 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACACDLGDGKLFMVGLLGRDDW 630
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 631 RVRDQWEVDTGVR 669
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 287 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 114
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 113 EPKSTK 96
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 662 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQAHASSPPTR 546
P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1242 PSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 474 WVRRHHGTAYSKPCTCHDGG 533
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -1
Query: 668 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQAHASSPPTRW*NATPVMAS 516
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 458 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 363
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,456
Number of Sequences: 5004
Number of extensions: 63665
Number of successful extensions: 239
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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