Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M12
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   2.5  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   2.5  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   3.4  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   4.4  

>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 456 PDPSLYGRGPSTKNASDHTFLF 391
           P+P+L    P+T+ AS++T+L+
Sbjct: 174 PEPALLPEAPNTREASNNTYLY 195


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 366 HREGGV*FQIGTYGRKHFLLTDLVHKDLGL 455
           ++E G+  ++G+YG  ++  T  VH +LG+
Sbjct: 470 YKESGIGRELGSYGLTNYTQTKAVHINLGM 499


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 537 SKQLSNSPRSPYCIXTSSHGSSFLEALLDGFINALRMQD 653
           +K+LSN  +S  C+  +S  +  L   LDG +    + D
Sbjct: 243 TKKLSNHQKSITCLAMNSENTRLLSGGLDGHVKIYNISD 281


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 568 HIAFXHLLMVVLFSRHCWMDSSTHCGCK 651
           H+   HL+M + + RH  +D +T   C+
Sbjct: 272 HLCHGHLVMCMGYRRHAMLDENTFDDCR 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,278
Number of Sequences: 5004
Number of extensions: 68418
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)