Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M12
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    89   5e-18
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...    89   5e-18
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    33   0.22 
01_06_0861 - 32528419-32529102                                         29   3.5  
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337     28   8.2  

>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
 Frame = -3

Query: 671 LLAXCLVLHPQ--CVDESIQQCL-----EKRTTMRRCXNAIWRPR*IRELLTFACPKFLS 513
           LLA CL L PQ   +DE++   L     +K T M R  +  +      EL ++ACPKF++
Sbjct: 310 LLAICLSLCPQDKLIDENVGTQLKEKYGDKMTKMHRYDDEAYAI--YDELFSYACPKFIT 367

Query: 512 ACPPPI-EPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAA 336
           A PP + EP  NY +DA + Q ++F+ EV+QQ++L  IRSYLKLY+T+ + KLA +M   
Sbjct: 368 ASPPVLREPYTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITIGKLAKYMDV- 426

Query: 335 RGSERDAAREHAALAIHLLCFKHKMKNV 252
                    +   L   L+ +KHKM ++
Sbjct: 427 ---------DEVTLRTILMTYKHKMHSI 445



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 12/64 (18%)
 Frame = -1

Query: 223 DGKFQSGSELDFYIDN------------DMIHIADTKVAHRYGDFFIRKLLKFEELNRKL 80
           DGK  S ++ DFYID             D+IH+ ++K+   +GD+F+R++LKFEE+  +L
Sbjct: 448 DGKVISSADFDFYIDECMQQPLVWFPAEDIIHVVESKLTKNHGDYFLRQILKFEEMITQL 507

Query: 79  HHIK 68
             ++
Sbjct: 508 DKVQ 511


>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 11/150 (7%)
 Frame = -3

Query: 668 LAXCLVLHPQ--CVDESIQQCL-----EKRTTMRRCXNAIWRPR*IRELLTFACPKFLSA 510
           LA CL L PQ   +DE++   L     +K T M+R     +      EL ++ACPKF++ 
Sbjct: 331 LAVCLSLCPQHNLIDENVSTQLKEKYNDKMTKMQRFDEETYAA--YDELFSYACPKFITP 388

Query: 509 CPPPIE-PGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAAR 333
            PP ++ P  NY +DA + Q ++F+ EV+QQ++L  IRSYLKLY+T+ +AKLA +M    
Sbjct: 389 SPPALDQPLTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITIAKLAQYMEVDE 448

Query: 332 GSERDAAREHAALAIH---LLCFKHKMKNV 252
            + R  A ++ +  ++   L+ +KHKM  V
Sbjct: 449 ATLR--AMKNLSQYLYRSILMTYKHKMHAV 476



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 22/52 (42%), Positives = 38/52 (73%)
 Frame = -1

Query: 223 DGKFQSGSELDFYIDNDMIHIADTKVAHRYGDFFIRKLLKFEELNRKLHHIK 68
           +GK  S ++ DFYI  D+IH+ ++K   R+GD+F+R++LKFEE+  +L  ++
Sbjct: 479 NGKIVSSADFDFYIKEDVIHVMESKPIKRHGDYFLRQILKFEEMIGELEKVQ 530


>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = -3

Query: 683  ANVPLLAXCLVLHPQCVDESIQQCLEKRTTMRRCXNAIWRPR*IRELLTFACPKFLSACP 504
            AN+ LL+ CL +        +      +     C    W P  + +L   +CP F+ +CP
Sbjct: 1009 ANLDLLSSCLEVLKITKCRKLTSFQVLQVLPPHCEEKTWLPN-MNKLKVHSCPHFIVSCP 1067

Query: 503  PPIEPGANYGRDAVKHQTQVFMDEVRQQKMLP--TIRSY 393
             P  P A   + +V  +  +    +  +K  P  TI+SY
Sbjct: 1068 FP--PSAELSKVSVSIRGVLAPPAIEMRKHWPLFTIKSY 1104


>01_06_0861 - 32528419-32529102
          Length = 227

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 267 VLEAEQVNGESRMFTCRVTLTAASSRHECS*FRHREGGV*FQIGTYGRKH 416
           ++  E  + E R+ T R T +  S     + + HR GG+ F+  TYGR H
Sbjct: 3   IVGEEYCSAEERVLTVRKT-SHFSPGDGFAAYDHRTGGLAFRADTYGRGH 51


>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
          Length = 200

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 359 LAAFMSAARGSERDAAREHAALAIHLLCFKHKMKNVVW 246
           LA F   A G+        AA A+HLLCF       VW
Sbjct: 6   LAVFFLLAGGAGLGMTAAAAAKAVHLLCFATSWGVTVW 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,125,182
Number of Sequences: 37544
Number of extensions: 499077
Number of successful extensions: 1136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)