Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M11
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   3.0  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 488 PYPVYKEVQVPLVKEVPYPVKYHVPI 411
           P PV + V VP+  +VP P++  VP+
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPV 174


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = -1

Query: 590 PRXVPVPKPYEVIKKIPYTXXXXXXXXXXXPIDKPYPVYKEVQVPLVKEVPYPVKYHVPI 411
           P+ +P PKP    K +P+            P   P P  K +  P  K  P P+  H P 
Sbjct: 136 PKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPMPKP--KPKPKPMPKHKPK 193

Query: 410 YFKK 399
            F K
Sbjct: 194 PFPK 197



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = -1

Query: 590 PRXVPVPKPYEVIKKIPYTXXXXXXXXXXXPIDKPYPVYKEVQVPLVKEVPYPVKYHVPI 411
           P   P PKP  + K  P             PI KP P  K +  P+ K  P P  +  P+
Sbjct: 176 PMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKP--FPKPM 233

Query: 410 YFKK 399
            F K
Sbjct: 234 LFPK 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,321,241
Number of Sequences: 27780
Number of extensions: 230043
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)