Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M10
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   1.3  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    28   1.7  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    26   6.9  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 316 LTTRKLAERLGVQQPALYWHFRNKR 242
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +2

Query: 212 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVSTGPGRHGSLYSAATLSC 391
           H F Q   +   +P++P    ++NP P R+ +      +   +T P ++G +     LS 
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRR-SSTMNYKSVSTTTSPSKYGYVSGRIALSP 354

Query: 392 LTL 400
           + L
Sbjct: 355 IHL 357


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 263 VKRRLLNPQPFRQFACRQTVYADLVSTGPGRHGSLYSAATLSCL 394
           + +  + P  F+ F+  +T+Y +L  + P    + +  AT SC+
Sbjct: 703 ISKLSIQPPTFQLFSTLETIYLELKDSMPPNEAADWMIATTSCM 746


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 606 LESGGWIGPGVFYGGQTAWMASPGDLTVH*TSSAY 710
           L  GGW+ P ++Y G+++ + + G L +   S  Y
Sbjct: 103 LPYGGWVAPNIYYMGRSS-VINVGGLRIAGISGIY 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,179
Number of Sequences: 5004
Number of extensions: 63199
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)