Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M10
         (959 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    30   4.1  
AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T mismatch...    30   4.1  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    30   4.1  
AE014296-2765|AAF49441.1|  197|Drosophila melanogaster CG16724-P...    29   7.2  

>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
           depedent uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 YADLVSTGPGRHGSLYSAATLSCLT 397
           + D V+TGPGR+G L S  T  CL+
Sbjct: 657 HLDAVTTGPGRYGILVSNDTPECLS 681


>AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T
           mismatch-specific thymineDNA glycosylase protein.
          Length = 1095

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 YADLVSTGPGRHGSLYSAATLSCLT 397
           + D V+TGPGR+G L S  T  CL+
Sbjct: 14  HLDAVTTGPGRYGILVSNDTPECLS 38


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
           protein.
          Length = 1738

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 YADLVSTGPGRHGSLYSAATLSCLT 397
           + D V+TGPGR+G L S  T  CL+
Sbjct: 657 HLDAVTTGPGRYGILVSNDTPECLS 681


>AE014296-2765|AAF49441.1|  197|Drosophila melanogaster CG16724-PA,
           isoform A protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 142 HSRSEMSASRRRLSAPNAYDSPP 210
           HSRS  S  RRR  +P+ Y+ PP
Sbjct: 111 HSRSRSSERRRRQRSPHRYNPPP 133


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,536,237
Number of Sequences: 53049
Number of extensions: 858625
Number of successful extensions: 1883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4792133502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)