Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_M09
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z92849-6|CAB07429.2|  306|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical p...    28   8.7  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 301  GDGDSTSRTHNS---QFNHPYGYQPPVQTADDIAAQPPPR 191
            GDG STS++H+S     NH   YQPPV  +        PR
Sbjct: 1188 GDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPR 1227



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 289  STSRTHNSQFNH-PYGYQPPV--QTADDIAAQPPPRSQADIDYELKVRKFLEMT 137
            S+ +++  ++N  P G  PP   Q++ + A  PP  S+   DY   VRK  E+T
Sbjct: 1219 SSQQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPPHYSEMSNDYNRMVRKLAELT 1272


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
            F52G2.2b protein.
          Length = 1129

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 301  GDGDSTSRTHNS---QFNHPYGYQPPVQTADDIAAQPPPR 191
            GDG STS++H+S     NH   YQPPV  +        PR
Sbjct: 998  GDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPR 1037



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 289  STSRTHNSQFNH-PYGYQPPV--QTADDIAAQPPPRSQADIDYELKVRKFLEMT 137
            S+ +++  ++N  P G  PP   Q++ + A  PP  S+   DY   VRK  E+T
Sbjct: 1029 SSQQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPPHYSEMSNDYNRMVRKLAELT 1082


>Z92849-6|CAB07429.2|  306|Caenorhabditis elegans Hypothetical
           protein H12D21.7 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 700 IPFHEEAQNSXDFLKSKTTASKPLIEPAELLLPGLTRGLSHM 575
           IPF+E A+N  D+L ++TT      EP     P      SH+
Sbjct: 179 IPFNEFAENKVDYLDARTTPQFTGEEPLNKTFPDTKATGSHV 220


>U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical
           protein C28C12.1 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/65 (20%), Positives = 34/65 (52%)
 Frame = -3

Query: 259 NHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAETTQ 80
           N+P   + PV+   ++    P +S  + D  LK +  ++ + +D+  +E ++  +++T  
Sbjct: 70  NNPKKEEEPVKDGKEVVQDQPKKSSREKDMMLKEKTAIDFSGDDNKKKETMQ--VSKTKS 127

Query: 79  YKRNR 65
            + N+
Sbjct: 128 ARNNK 132


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 298  DGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPP 194
            D DS S + +S  + P    PP   +DD+   PPP
Sbjct: 1324 DSDSFSTSRSSSPSPPPPPPPPPPPSDDLTPVPPP 1358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,557
Number of Sequences: 27780
Number of extensions: 223983
Number of successful extensions: 804
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)