Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_M08
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0182 + 1245577-1245670,1245928-1246017,1246258-1246290,124... 34 0.16
01_04_0095 + 15979884-15980234 32 0.64
01_06_0310 - 28376378-28376607,28376789-28376897 31 0.85
11_01_0738 - 6218730-6220173,6221969-6223056 31 1.5
01_01_0118 - 871481-872606,872795-872950,873051-873817 31 1.5
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 30 2.0
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 29 3.4
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77... 29 3.4
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444... 29 4.5
>02_01_0182 +
1245577-1245670,1245928-1246017,1246258-1246290,
1246451-1246483,1246657-1246689,1246872-1246904,
1247073-1247105,1247237-1247286
Length = 132
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +2
Query: 452 NDASLRRFTRSKREVSFSSAESCFIFNKGAAGRSIANDANPRSSFVSVN 598
N SL+ SKR + F SA SC IF G +G + N + RS + SVN
Sbjct: 34 NIFSLKYTPFSKRGLKFGSASSCPIFGSGRSGYNSVN-PDGRSGYNSVN 81
>01_04_0095 + 15979884-15980234
Length = 116
Score = 31.9 bits (69), Expect = 0.64
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 337 PVPAGSPRESHCCTLRARDDNNSKRLASRQTCH-QLYEELSAGRGRAGPC 191
P P SP S CC R+R S L + H +L E + G AG C
Sbjct: 33 PCPGASPMASPCCRTRSRARTGSTSLGAVAHRHVELREGVGHGGDEAGAC 82
>01_06_0310 - 28376378-28376607,28376789-28376897
Length = 112
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 474 NLRSDASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYNPSRQDLHA 313
+L + A+ H AA P R+ ++ W E GY+ VY+ +L A
Sbjct: 6 SLLAAAAADDARHAQAAGPRRDDDHKAWLLRRAWHEAREGYVVVYDGGGNELSA 59
>11_01_0738 - 6218730-6220173,6221969-6223056
Length = 843
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 380 QDGKRVTPVTWRCTTRPGRISTRISLLYPPCPGR*QFKTSRQPSNLSPT 234
+DGK V C P + I++LY CP R TS+ PSN + T
Sbjct: 312 RDGKHTAYVA--CLVAP--VVAYIAILYIACPSRSPSSTSKSPSNTNTT 356
>01_01_0118 - 871481-872606,872795-872950,873051-873817
Length = 682
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 286 GHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 432
G GGY S + +LPG +H + + + +C +E++ T GR H
Sbjct: 366 GQGGYGSVYKGVLLPGD-LHVAIKILNGYSNCNGEEFISEVATIGRIHH 413
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 226 LRIVGDKFDGWRDVLNCYRPGHGGYSSEIRVEILPGRVVHRHVTG 360
+ +VGD W+D + C G Y +EIR+ G+ ++ + G
Sbjct: 470 VELVGDFTSNWKDKVKCDHKGGSRYEAEIRLR--HGKYYYKFIAG 512
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 516 LSADENDTSLLDLVNLRSDASLSHGEH-HVAAAPARNASENVLI 388
LS DEN + + + +DAS++H EH +VA A+ VL+
Sbjct: 435 LSMDENLQMIAKIAAVCNDASIAHSEHQYVATGMPTEAALKVLV 478
>01_01_0103 -
773727-774737,774797-774813,774852-775078,777465-778237
Length = 675
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 277 YRPGHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 432
Y G GGY S + LPG VH + + +C ++++ T GR H
Sbjct: 352 YSQGQGGYGSVYKGVFLPGD-VHVAIKMLDGNSNCNGEDFISEVATIGRIHH 402
>10_08_0669 +
19742140-19742189,19742886-19742923,19744260-19744448,
19746402-19748188
Length = 687
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 690 PPSAAPVPVTEDADALASRINXTLGSWPILQLTDTNDDRGLASFAMLLPAAPLLNIKQLS 511
PP A + + D DALA +++ L +L T D + A AA ++++L
Sbjct: 227 PPRAGKLQMQSDLDALAGKLDLNLRDCALLIKTGVLSDATVPPVAPAAEAAAQTDVRELL 286
Query: 510 A 508
A
Sbjct: 287 A 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,825
Number of Sequences: 37544
Number of extensions: 376961
Number of successful extensions: 1174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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