Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_M07
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 154 2e-38
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 154 2e-38
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 93 3e-20
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 76 5e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.015
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 27 3.0
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 27 3.9
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 9.1
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 25 9.1
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 154 bits (373), Expect = 2e-38
Identities = 69/115 (60%), Positives = 83/115 (72%)
Frame = -1
Query: 552 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 373
L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESF
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESF 778
Query: 372 GFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 208
GFT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 779 GFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
Score = 92.3 bits (219), Expect = 7e-20
Identities = 45/72 (62%), Positives = 50/72 (69%)
Frame = -3
Query: 700 AXKEGVMAEENLRGVRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRLMEPVY 521
A KEG M EENLR RFN DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+
Sbjct: 670 ASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVF 729
Query: 520 LCEIQCP*SSCG 485
L EIQ ++ G
Sbjct: 730 LVEIQVSENAMG 741
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 154 bits (373), Expect = 2e-38
Identities = 69/115 (60%), Positives = 83/115 (72%)
Frame = -1
Query: 552 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 373
L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESF
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESF 778
Query: 372 GFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 208
GFT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 779 GFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
Score = 92.3 bits (219), Expect = 7e-20
Identities = 45/72 (62%), Positives = 50/72 (69%)
Frame = -3
Query: 700 AXKEGVMAEENLRGVRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRLMEPVY 521
A KEG M EENLR RFN DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+
Sbjct: 670 ASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVF 729
Query: 520 LCEIQCP*SSCG 485
L EIQ ++ G
Sbjct: 730 LVEIQVSENAMG 741
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 93.5 bits (222), Expect = 3e-20
Identities = 44/95 (46%), Positives = 60/95 (63%)
Frame = -1
Query: 546 SPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 367
SP L V+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF
Sbjct: 837 SPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGF 896
Query: 366 TADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 262
DLR +T GQA Q VFDHWQV+PGDP + KP
Sbjct: 897 ETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKP 931
Score = 79.8 bits (188), Expect = 4e-16
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = -3
Query: 694 KEGVMAEENLRGVRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRLMEPVYLC 515
+EG + +E +R V F DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+
Sbjct: 788 REGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMV 847
Query: 514 EIQCP 500
E+ P
Sbjct: 848 EVHAP 852
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 76.2 bits (179), Expect = 5e-15
Identities = 32/69 (46%), Positives = 47/69 (68%)
Frame = -1
Query: 489 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 310
+G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A+PQ +F
Sbjct: 878 LGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFH 937
Query: 309 HWQVLPGDP 283
+++L +P
Sbjct: 938 GFEMLDENP 946
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 601 GQIIPTXRRCLYACLLTAQPRLMEPVYLCEIQ 506
GQ+I + + L PRLM +Y C++Q
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQ 872
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/71 (23%), Positives = 38/71 (53%)
Frame = -1
Query: 546 SPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 367
+P++ + V + P GG+ G L++R+ + + F ++A +P+N F +
Sbjct: 671 NPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSY 728
Query: 366 TADLRSNTGGQ 334
++D+R+ T G+
Sbjct: 729 SSDIRALTKGK 739
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -1
Query: 552 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 373
+L ++W++Y FV + +P AV +Y R FE +I A + V+
Sbjct: 338 ILLKLIWNIYTFVYYGLPFFAVYRLYKQAGESRKLGFEAKYSLLRTCYIALAAVTVSNCL 397
Query: 372 GFTADLRSNTGGQ 334
F +R G Q
Sbjct: 398 -FLGVVRPLLGSQ 409
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 588 GMIWPPPLWMASVWSVTSXMLNLTPRKFSSAITPSLXA 701
G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 307 GVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 309 HWQVLPGDPCEPQSKPYNVVQETRKRK 229
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 584 CWNDLATTSMDGISMECYIIXVESNTTQI 670
CW++L+TTS + + II + TT I
Sbjct: 211 CWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -1
Query: 552 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHV 445
+ +PV + VP +A+ +G++N+R G +
Sbjct: 828 VFNPVTQGALLMYTILVPFIALSAAFGIMNKRLGGI 863
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,535
Number of Sequences: 5004
Number of extensions: 64018
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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