Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_M05
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 62 9e-11
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 35 0.012
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 29 0.79
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 29 1.0
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 29 1.0
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.4
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 27 2.4
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 3.2
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 5.6
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 7.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.8
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 9.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.8
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 9.8
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 62.1 bits (144), Expect = 9e-11
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = -1
Query: 461 LMLTLKPSLLAADLDVLQRHDQAVIGKVYTGVIYAI-RDYILVSFFNNLMAYVPKTMVSI 285
++LTLK SLL DL ++ ++QA G G + I D +V F+N++ A++P + +S
Sbjct: 554 VLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSE 613
Query: 284 EPIENLTEAFHVGQIVSCTILNVDIENKKL 195
I + E F VGQ +S TI++ D EN+K+
Sbjct: 614 AYIRDAREHFKVGQTLSVTIVSCDPENRKM 643
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = -2
Query: 778 RVLXYNXXDYFYSVXDDPSVVNEKYFTMEQLSVGEIVDGHVKTVTXSYILVSL 620
R++ Y+ D Y + SV+N+++ +E + VG+ VDG + + I+V++
Sbjct: 457 RIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTI 509
Score = 36.3 bits (80), Expect = 0.005
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = -1
Query: 479 DPAKPALMLTLKPSLLAADLDVLQRHDQAVI--GKVYTGVIYAIRDY-ILVSFFNNLMAY 309
D +K + L+LK SL+ A + + + G Y G + + + V F + L+A
Sbjct: 728 DTSKKLISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVAL 787
Query: 308 VPKTMVSIEPIENLTEAFHVGQIVSCTILNVDIENKKLLGSLIP 177
VPK +S E + + + Q V+C L+V++ +K S P
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFKP 831
Score = 29.1 bits (62), Expect = 0.79
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 407 RHDQAVIGKVYTGVIYA-IRDYILVSFFNNLMAYVPKTMVSIEPIENLTEAFHVGQIVSC 231
R + +G+ G I I I+V+ + VP T ++ ++ F VG V C
Sbjct: 483 RIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKC 542
Query: 230 TILNVDIENKKLLGSL 183
+L+ ++ K++L +L
Sbjct: 543 RVLSTNVLRKRVLLTL 558
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = -1
Query: 155 RKRKAKEKHDSIGEERETEDEGATQINGEKDKPKNKQTLASGDAPDKKKK 6
+ +K K+K S + E D+G + + EKDK K K++ + DAP K +K
Sbjct: 148 KSKKKKKKSKSKDDGSEALDDGDIE-SSEKDKKKKKKSKENDDAPKKDRK 196
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 29.1 bits (62), Expect = 0.79
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 540 PKLTKKFKVGQQVRARVLXRGPCQAG 463
P L K+F+VG ++ R+L RG G
Sbjct: 137 PSLQKRFQVGDELELRILKRGSAPGG 162
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = -1
Query: 203 KKLLGSLIPTQTFRINRKRKAKEKHDSIGEERE-TEDEGATQIN-----GEKDKPKNKQT 42
KK+L + + I R ++ +K + I E + TE E A +I+ K KPK K T
Sbjct: 698 KKVLEAQGRKKMRTIKRLQRVAKKAEGISESGDMTESEKAKEISRLVSRATKSKPKAKPT 757
Query: 41 LASGDAPDKKKK 6
L P+K K
Sbjct: 758 LVVAKGPNKGLK 769
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 92 GATQINGEKDKPKNKQTLASGDAPDKKKKK 3
G ++ +KDK K+K+ + + DKKKKK
Sbjct: 659 GKLMMSSKKDKDKSKEKVPTYGTSDKKKKK 688
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 179 PTQTFRINRKRKAKEKHDSIGEERETEDEGATQINGEKDKPKNKQTLASGDAPDKKKKK 3
PT +N +K K S+ + EDE A + + K K+ + +KK+KK
Sbjct: 413 PTVEAEVNGVEDSK-KRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKK 470
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -1
Query: 149 RKAKEKHDSIGEERETEDEGATQINGEKDK-----PKNKQTLASGDAPDKKKKK 3
++AKE + EE E EG + E+++ P K T DAPD K+ K
Sbjct: 114 KEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDPLEKMTQECMDAPDCKEVK 167
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 386 GKVYTGVIYAIRDYILVSFFNNLMAYVP 303
G IY I Y L SF NN+ +Y P
Sbjct: 282 GTATNSSIYEISPYYLTSFDNNVRSYTP 309
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 164 ERSASV*GCPAVSCSRYPHSVSC 232
ER+ V GC SC R P+S+ C
Sbjct: 75 ERALYVWGCHNPSCRRVPNSIVC 97
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = -1
Query: 377 YTGVIYAIRDYILV---SFFNNLMA---YVPKTMVSIEPIENLTEAF 255
YTG +YA+ + L +F ++++A + + V +EPIE+ EA+
Sbjct: 387 YTGHLYALFAFKLSHDEAFISSILACFTFFSRDKVHVEPIEDCNEAY 433
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -1
Query: 164 RINRKRKAKEKHDSIGEERETEDEGATQINGEKDKPKNKQTLASGDAPDKKKK 6
RI +RK +EK D EER E + + EK++ + +A+ AP++ K+
Sbjct: 700 RILEERKRREKLDKEEEERRRR-ELLEKESEEKERRLREAKIAAFFAPNQTKE 751
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 381 LPDHGLVVALQHVEVGCEEGRLQGQHEGRLGRVH 482
LPD L +L+ + R G+H G+ GR H
Sbjct: 552 LPDSKLKYSLEDQATYDQSSRYPGRHFGKTGRSH 585
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 331 NDTSI*SRIAYMTPVYTFPITAWSW 405
+++SI +++T +YTFP T +W
Sbjct: 626 DNSSIEQSSSFLTKLYTFPFTIITW 650
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/69 (21%), Positives = 34/69 (49%)
Frame = -1
Query: 245 QIVSCTILNVDIENKKLLGSLIPTQTFRINRKRKAKEKHDSIGEERETEDEGATQINGEK 66
QI L+ +++ ++ LG + N K+ KH+ +GEE + E+E + + E
Sbjct: 326 QITHYISLDDNLDVQESLGIFHYDPDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEET 385
Query: 65 DKPKNKQTL 39
+ + +++
Sbjct: 386 SESEEDESV 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,093
Number of Sequences: 5004
Number of extensions: 58346
Number of successful extensions: 239
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -