Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_M03
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 236 3e-63
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 122 4e-29
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 97 2e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 96 4e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 96 4e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 63 4e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 62 7e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 8e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 29 0.75
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 5.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.0
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 25 9.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 236 bits (577), Expect = 3e-63
Identities = 110/134 (82%), Positives = 117/134 (87%)
Frame = -1
Query: 699 LPDGQVITIGNEDSVAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 520
LPDGQVITIGNE A P +LG+E GIHE TYNSIMKCDVDIRKDLY N V+SG
Sbjct: 242 LPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSG 301
Query: 519 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 340
GTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 339 YDESGPSIVHRKCF 298
YDESGP IV+RKCF
Sbjct: 362 YDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 122 bits (295), Expect = 4e-29
Identities = 57/135 (42%), Positives = 89/135 (65%)
Frame = -1
Query: 702 RLPDGQVITIGNEDSVAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 523
+LPD Q IT+G E A + NP +G EA G+H + SI+ D+D+R LY+N VLS
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLS 305
Query: 522 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 343
GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 342 EYDESGPSIVHRKCF 298
EY ++ +++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 97.1 bits (231), Expect = 2e-21
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 11/150 (7%)
Frame = -1
Query: 741 DXXXASAXPXRXLRLPDGQVITIGNEDSVAQRLSSNPR---SLGME------ACGIHETT 589
D AS+ + PDG G E + NP S E + G+HE
Sbjct: 269 DEAKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELV 328
Query: 588 YNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERK 415
Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 329 YQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATS 388
Query: 414 YSVWIGGSILASLSTFQQMWISKQEYDESG 325
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 389 NAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 96.3 bits (229), Expect = 4e-21
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 12/141 (8%)
Frame = -1
Query: 711 RXLRLPDGQVITIGNEDSVAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRKDLYANT 532
R LPDG+VI +G+E P +G E G+ E +++I DVDIRK LY
Sbjct: 238 RNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAI 297
Query: 531 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 385
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 384 AS-LSTFQQMWISKQEYDESG 325
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 96.3 bits (229), Expect = 4e-21
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 6/128 (4%)
Frame = -1
Query: 666 EDSVAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 487
E++ + S+ + GI + N I +CDVDIR L N ++ GGT++ G + R
Sbjct: 306 ENNEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLR 365
Query: 486 MQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP-- 322
+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G
Sbjct: 366 LQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDR 424
Query: 321 -SIVHRKC 301
+++ ++C
Sbjct: 425 LALIEKRC 432
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 63.3 bits (147), Expect = 4e-11
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Frame = -1
Query: 681 ITIGNEDSVAQRLSSNPRSLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 505
I +G E +A + NP + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 504 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 367
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 366 QQMWISKQEYDESGPSIVHR 307
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 62.5 bits (145), Expect = 7e-11
Identities = 36/128 (28%), Positives = 60/128 (46%)
Frame = -1
Query: 687 QVITIGNEDSVAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 508
QV+ + NE + L +P + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 507 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 328
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 327 GPSIVHRK 304
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 55.6 bits (128), Expect = 8e-09
Identities = 25/108 (23%), Positives = 55/108 (50%)
Frame = -1
Query: 636 NPRSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP 457
+P +G++ GI E + + + ++ ++ L +N +++GG PG+ R+++E+T++ P
Sbjct: 604 SPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMP 663
Query: 456 STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 313
I + W G S + F+ ++++EY E GP +
Sbjct: 664 VGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 552 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 382
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 381 SLSTFQQMWISKQEYDESGPSIVHRK 304
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 29.1 bits (62), Expect = 0.75
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = -1
Query: 684 VITIGNEDS-VAQRLSSNPRSLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 508
++T+ NE++ V + LSS + E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 507 YPGIADRMQKEITALAPSTMKIKIIAPPERKYS 409
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 405 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 304
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 631 SFFGYGSLRHPRDHI*LHHEVRRG 560
S +GY +L HPR+ I + + RG
Sbjct: 470 SLYGYSTLLHPRNPICVRQRIGRG 493
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 480 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 370
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 618 YPKNEGWKRASGQ 656
YP N+GWK+A G+
Sbjct: 309 YPVNQGWKQAMGR 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,068
Number of Sequences: 5004
Number of extensions: 56889
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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