Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L24
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box p...   174   3e-43
BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.       174   3e-43
BC005116-1|AAH05116.1|  709|Homo sapiens structure specific reco...   174   3e-43

>M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box
           protein.
          Length = 709

 Score =  174 bits (424), Expect = 3e-43
 Identities = 93/205 (45%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
 Frame = -2

Query: 789 LDPPIKQVKQVPLLXXCXYEEETXVDF---LYRGRIERXI*SXITKELFXPTXRSSSXNH 619
           LDPPIKQ +         + ++  +     +    +E+     +TK +        S   
Sbjct: 259 LDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVM 318

Query: 618 EGHHQ*KVTGPGDFLGHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVN 439
           +     K+T PG+F GH     I CSYKA++G LYPL++GFIYVHKPPVHIRF+EI+ VN
Sbjct: 319 KALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVN 378

Query: 438 FARGGASSTKSFDFEIELKLGSVHTFSSIEKGEYDKLFNYISSKKLHVKNTG-KNDKALY 262
           FAR G ++T+SFDFEIE K G+ +TFSSIE+ EY KLF+++++KKL++KN G K      
Sbjct: 379 FAR-GTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPS 437

Query: 261 DDDFGDSDTEKEPDAYLERVKAEAK 187
            D++ DSD E + DAYLER+K E K
Sbjct: 438 YDEYADSD-EDQHDAYLERMKEEGK 461


>BC091486-1|AAH91486.1|  633|Homo sapiens SSRP1 protein protein.
          Length = 633

 Score =  174 bits (424), Expect = 3e-43
 Identities = 93/205 (45%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
 Frame = -2

Query: 789 LDPPIKQVKQVPLLXXCXYEEETXVDF---LYRGRIERXI*SXITKELFXPTXRSSSXNH 619
           LDPPIKQ +         + ++  +     +    +E+     +TK +        S   
Sbjct: 259 LDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVM 318

Query: 618 EGHHQ*KVTGPGDFLGHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVN 439
           +     K+T PG+F GH     I CSYKA++G LYPL++GFIYVHKPPVHIRF+EI+ VN
Sbjct: 319 KALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVN 378

Query: 438 FARGGASSTKSFDFEIELKLGSVHTFSSIEKGEYDKLFNYISSKKLHVKNTG-KNDKALY 262
           FAR G ++T+SFDFEIE K G+ +TFSSIE+ EY KLF+++++KKL++KN G K      
Sbjct: 379 FAR-GTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPS 437

Query: 261 DDDFGDSDTEKEPDAYLERVKAEAK 187
            D++ DSD E + DAYLER+K E K
Sbjct: 438 YDEYADSD-EDQHDAYLERMKEEGK 461


>BC005116-1|AAH05116.1|  709|Homo sapiens structure specific
           recognition protein 1 protein.
          Length = 709

 Score =  174 bits (424), Expect = 3e-43
 Identities = 93/205 (45%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
 Frame = -2

Query: 789 LDPPIKQVKQVPLLXXCXYEEETXVDF---LYRGRIERXI*SXITKELFXPTXRSSSXNH 619
           LDPPIKQ +         + ++  +     +    +E+     +TK +        S   
Sbjct: 259 LDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVM 318

Query: 618 EGHHQ*KVTGPGDFLGHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVN 439
           +     K+T PG+F GH     I CSYKA++G LYPL++GFIYVHKPPVHIRF+EI+ VN
Sbjct: 319 KALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVN 378

Query: 438 FARGGASSTKSFDFEIELKLGSVHTFSSIEKGEYDKLFNYISSKKLHVKNTG-KNDKALY 262
           FAR G ++T+SFDFEIE K G+ +TFSSIE+ EY KLF+++++KKL++KN G K      
Sbjct: 379 FAR-GTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPS 437

Query: 261 DDDFGDSDTEKEPDAYLERVKAEAK 187
            D++ DSD E + DAYLER+K E K
Sbjct: 438 YDEYADSD-EDQHDAYLERMKEEGK 461


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,181,939
Number of Sequences: 237096
Number of extensions: 1708281
Number of successful extensions: 3877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3871
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)