Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L24
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...   132   4e-31
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...   127   9e-30
AL021177-2|CAA15978.1|  192|Caenorhabditis elegans Hypothetical ...    28   9.7  

>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score =  132 bits (318), Expect = 4e-31
 Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 3/204 (1%)
 Frame = -2

Query: 789 LDPPIKQ--VKQVPLLXXCXYEEETXVDFLYRGRIERXI*SXITKELFXPTXRSSSXNHE 616
           L+PPI+Q       L+     +EE  ++              + +E+  P   + S   +
Sbjct: 260 LNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQLDYFNGNLQREMTGPIYETISILFK 319

Query: 615 GHHQ*KVTGPGDFLGHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVNF 436
                KVT PG FLG   TPAI C+++   G LYP++KGF+++ KP ++IRFEEI+S +F
Sbjct: 320 SICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPMEKGFLFIQKPVMYIRFEEISSCHF 379

Query: 435 ARGGASS-TKSFDFEIELKLGSVHTFSSIEKGEYDKLFNYISSKKLHVKNTGKNDKALYD 259
           AR  + + T++FDFEI+LK GS  TFS+++K E +KLF+Y++ K++ ++N+ + D     
Sbjct: 380 ARSDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNKLFDYLNKKEIKIRNSHRIDNK--S 437

Query: 258 DDFGDSDTEKEPDAYLERVKAEAK 187
             +G SD E + D Y   VKAE +
Sbjct: 438 AGYGSSD-EDDIDPYKSTVKAEGR 460


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score =  127 bits (307), Expect = 9e-30
 Identities = 71/204 (34%), Positives = 118/204 (57%), Gaps = 3/204 (1%)
 Frame = -2

Query: 789 LDPPIKQ--VKQVPLLXXCXYEEETXVDFLYRGRIERXI*SXITKELFXPTXRSSSXNHE 616
           L+PPI+Q   +   L+     +EE  ++              + +++  P   + S   +
Sbjct: 260 LNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQLESSNGNLRRDMTGPIYETISILFK 319

Query: 615 GHHQ*KVTGPGDFLGHHKTPAIACSYKAAAGYLYPLDKGFIYVHKPPVHIRFEEIASVNF 436
                K+T PG FLG   TPAI C+++   G LYP++KGF+++HKP ++IRFEEI+S +F
Sbjct: 320 SICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFIHKPAMYIRFEEISSCHF 379

Query: 435 ARGGASS-TKSFDFEIELKLGSVHTFSSIEKGEYDKLFNYISSKKLHVKNTGKNDKALYD 259
           AR  + + T++FDFEI+LK G   TF+++EK E +KLF+Y++ K + ++N+ + +  + D
Sbjct: 380 ARSDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNKKNIKIRNSQRVENTVAD 439

Query: 258 DDFGDSDTEKEPDAYLERVKAEAK 187
                SD E +P  Y   V AE +
Sbjct: 440 ----SSDDEIDP--YKAAVTAEGR 457


>AL021177-2|CAA15978.1|  192|Caenorhabditis elegans Hypothetical
           protein Y1A5A.1 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +3

Query: 411 SSTKRPLERSSQTQSPQIVCVLVACERI*NLCLGDTDSLPPPCMNTL---WPGSCGVLKS 581
           SS KRP++++ Q       CV    ++    C G  ++L   C+  L   W   C    S
Sbjct: 94  SSCKRPIKQTFQAADNHAYCVQCFAQKYNPKCAGCMETLVDTCLLALDRHWHPRCFTCSS 153

Query: 582 HQDLLPS 602
               LP+
Sbjct: 154 CNRPLPN 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,617,164
Number of Sequences: 27780
Number of extensions: 264149
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)