Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L23
(968 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 187 1e-47
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 158 5e-39
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 148 6e-36
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 128 5e-30
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 116 4e-26
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 7.4
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 187 bits (455), Expect = 1e-47
Identities = 89/115 (77%), Positives = 98/115 (85%)
Frame = -2
Query: 604 DDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETE 425
DDL VTNP R+A A+ +K CN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETE
Sbjct: 358 DDLLVTNPTRVAKAISEKTCNALLLKVNQIGSVTESIEAVRMSKRAGWGVMASHRSGETE 417
Query: 424 DTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 260
DTFIADL VGLSTGQIKTGAPCRSERLAKYNQ+LRIEEELG A YAG+ FR PV
Sbjct: 418 DTFIADLSVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGDAAVYAGEKFRAPV 472
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 158 bits (384), Expect = 5e-39
Identities = 76/94 (80%), Positives = 82/94 (87%)
Frame = -2
Query: 604 DDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETE 425
DDL VTNPKRIA A+ KKACN LLLKVNQIG+VTESI A L +K GWG MVSHRSGETE
Sbjct: 367 DDLLVTNPKRIAEAIGKKACNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETE 426
Query: 424 DTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 323
D FIADL VGL++GQIKTGAPCRSERLAKYNQI+
Sbjct: 427 DNFIADLAVGLASGQIKTGAPCRSERLAKYNQIV 460
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 148 bits (359), Expect = 6e-36
Identities = 68/112 (60%), Positives = 87/112 (77%)
Frame = -2
Query: 604 DDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETE 425
DDL +++P+RI AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRSG+T+
Sbjct: 368 DDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSGDTD 427
Query: 424 DTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFR 269
D+FIADL VG + GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N+R
Sbjct: 428 DSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGENWR 479
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 128 bits (310), Expect = 5e-30
Identities = 69/115 (60%), Positives = 80/115 (69%)
Frame = -2
Query: 604 DDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETE 425
DDL VTNP R+A A+++K+CN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETE
Sbjct: 330 DDLLVTNPTRVAKAIQEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETE 389
Query: 424 DTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 260
DTFIADL VGL+T +LRIEEELG A YAG FR PV
Sbjct: 390 DTFIADLAVGLAT-------------------LLRIEEELGAAAVYAGAKFRAPV 425
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 116 bits (278), Expect = 4e-26
Identities = 64/107 (59%), Positives = 73/107 (68%)
Frame = -2
Query: 580 KRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLV 401
+R+A A++ KACN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL
Sbjct: 316 QRVAKAIKDKACNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLA 375
Query: 400 VGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 260
VGLST +LRIEEELG A YAG FR PV
Sbjct: 376 VGLST-------------------LLRIEEELGAAAVYAGAKFRAPV 403
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.7 bits (61), Expect = 7.4
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 321 ALKRNLASTPNTPGRTSVDRSKNSLKKT*NSVFLSYPHFDSNKKSSIDY 175
ALKR + T G S+DRS +SLK + V S P+ +S SS Y
Sbjct: 515 ALKRPMGKTD---GNISLDRSNSSLKGSLYRVNESNPNMESTGASSHQY 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,074,271
Number of Sequences: 37544
Number of extensions: 334328
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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