Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L22
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   4.5  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   7.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   7.9  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    26   7.9  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.9  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 261 RPGSLTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMC 145
           RP  L      S+ CYSP   +  +  L  SPA + S C
Sbjct: 100 RPNELFKTSSMSSDCYSPQKSRESLNSLCHSPAPSVSSC 138


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 596 QWGTDESXFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 474
           QWGTD +   ++  TR+ +Q++  F + E      +  ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 330 EPLRDRPRGHQAGIPREVRQVPWRPGSLTIRKE 232
           +PL+ R R H+ G PR     P  P S T RKE
Sbjct: 10  KPLKKRSRAHRLGDPRFYCTYPDCPKSFT-RKE 41


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 282 LEECLLDVP*VDLGAAHHDADERLVVGADALHRVVQALSEET 407
           LEE  L+     L A+ +D D+   +    ++ V+ AL++ET
Sbjct: 10  LEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKET 51


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 292 ACLMSPRSISERLTTMRMSVLSLVPMPFIE*YRRSAKKPTLLFTHLAIASMPF 450
           A L   R+I +  T++ ++V  L+P+P  +  +  AK    + +H+    +PF
Sbjct: 102 AILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPF 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,476
Number of Sequences: 5004
Number of extensions: 55319
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)